Detail information of GWHGAAZE031039


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009785103.10PREDICTED: threonine synthase, chloroplastic-like [Nicotiana sylvestris]
COGYP_002463167.10threonine synthase
Swissprottr|Q9MT28|THRC_SOLTU0Threonine synthase, chloroplastic (Precursor)
trEMBLtr|K4C715|K4C715_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g062840.2.1}
TAIR10AT4G29840.10Pyridoxal-5'-phosphate-dependent enzyme family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5217748652179063-
GWHAAZE00000009mRNA5217748652179063-
GWHAAZE00000009exon5217748652179063-
GWHAAZE00000009CDS5217748652179063-
Transcript Sequence

Network for GWHGAAZE031039

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00291.26PALP1654711.80E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01733thrC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of amino acidsmap01230
Glycine, serine and threonine metabolismmap00260
Vitamin B6 metabolismmap00750

Gene Ontology

GO term OntologyName
GO:0006520biological_processcellular amino acid metabolic process
GO:0030170molecular_functionpyridoxal phosphate binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf55.164
SRR3591706second leaf50.375
SRR3591707mature leaf33.461
SRR3591708Shoot apex78.966
SRR3591709Stem42.442
SRR3591710White floral bud78.434
SRR3591711White flower84.847
SRR3591712Green floral bud104.675
SRR3591713Yellow flower86.368
SRP173429 SRR8316895Juvenile bud stage 58.393
SRR8316896Juvenile bud stage 79.164
SRR8316897Juvenile bud stage 30.604
SRR8316894Third green stage 30.806
SRR8316900Third green stage 108.779
SRR8316901Third green stage 102.730
SRR8316898Complete white stage 29.892
SRR8316899Complete white stage 72.994
SRR8316903Complete white stage 54.087
SRR8316902Silver flowering stage38.837
SRR8316904Silver flowering stage48.951
SRR8316905Silver flowering stage28.235
SRR8316906Gold flowering stage 81.132
SRR8316907Gold flowering stage 95.442
SRR8316908Gold flowering stage 94.528
SRP132670SRR6706286Control65.410
SRR6706287Light intensity 50%66.138
SRR6706288Light intensity 20%71.757
CNP0000432CNS0095592Slightly white alabastrum(diploid) 187.071
CNS0095593Slightly white alabastrum(diploid) 281.274
CNS0095594Slightly white alabastrum(diploid) 382.647
CNS0095595Whole white alabastrum(diploid) 290.743
CNS0095596Whole white alabastrum(diploid) 3107.450
CNS0095597Whole white alabastrum(diploid) 492.394
CNS0095598Silvery flower (diploied) 158.031
CNS0095599Silvery flower (diploied) 255.609
CNS0095600Silvery flower (diploied) 391.754
CNS0095601Golden flower (diploid) 152.973
CNS0095602Golden flower (diploid) 2102.187
CNS0095603Golden flower (diploid) 398.268
CNS0095604Slightly white alabastrum(tetraploid) 198.336
CNS0095605Slightly white alabastrum(tetraploid) 299.857
CNS0095606Slightly white alabastrum(tetraploid) 388.186
CNS0095607Whole white alabastrum(tetraploid) 184.563
CNS0095608Whole white alabastrum(tetraploid) 285.707
CNS0095609Whole white alabastrum(tetraploid) 398.522
CNS0095610Silvery flower (tetraploid) 186.820
CNS0095611Silvery flower (tetraploid) 2102.531
CNS0095612Silvery flower (tetraploid) 398.682
CNS0095613Golden flower (tetraploid) 182.616
CNS0095614Golden flower (tetraploid) 2125.269
CNS0095615Golden flower (tetraploid) 3225.282
CRA001975CRR073297Stem 1113.439
CRR073298Stem 2112.671
CRR073299Stem 3121.143
CRR073300Leaf 1112.420
CRR073301Leaf 2103.041
CRR073302Leaf 3124.219
CRR073303Juvenile bud 1120.902
CRR073304Juvenile bud 292.677
CRR073305Juvenile bud 3121.654
CRR073306Third green 193.743
CRR073307Third green 260.243
CRR073308Third green 378.608
CRR073309Second white 1111.424
CRR073310Second white 281.439
CRR073311Second white 383.199
CRR073312Silver flowering 194.946
CRR073313Silver flowering 2122.622
CRR073314Silver flowering 382.059
CRR073315Gold flowering 141.509
CRR073316Gold flowering 240.739
CRR073317Gold flowering 352.668
CRR073318Tawny withering 158.159
CRR073319Tawny withering 242.160
CRR073320Tawny withering 362.649