Gene detail

Detail information of GWHGAAZE031041

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002516111.1	7.8122E-147	DNA binding protein, putative [Ricinus communis]
Swissprot	tr\|Q5XEM9\|ALFL5_ARATH	1E-126	PHD finger protein ALFIN-LIKE 5, N-terminally processed
trEMBL	tr\|B9RQU2\|B9RQU2_RICCO	3E-147	DNA binding protein, putative {ECO:0000313\|EMBL:EEF46113.1}
TAIR10	AT5G20510.1	1E-84	alfin-like 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	52192861	52196836	-
GWHAAZE00000009	mRNA	52192861	52196836	-
GWHAAZE00000009	exon	52192861	52193124	-
GWHAAZE00000009	exon	52193410	52193545	-
GWHAAZE00000009	exon	52195357	52195585	-
GWHAAZE00000009	exon	52196596	52196628	-
GWHAAZE00000009	exon	52196725	52196836	-
GWHAAZE00000009	CDS	52196725	52196836	-
GWHAAZE00000009	CDS	52196596	52196628	-
GWHAAZE00000009	CDS	52195357	52195585	-
GWHAAZE00000009	CDS	52193410	52193545	-
GWHAAZE00000009	CDS	52192861	52193124	-

Transcript Sequence
>GWHTAAZE031075 ATGGACGGTGGTGGTGGTGGTGGTGGAGCACACTATAATCCTCGTACTGTCGAAGAGGTTTTTAGGGATTTCAAGGGTCGACGAGCTGGCATGATCAAAGCCCTTACCACAGATGTTGTGGAATTTTATCAGCAGTGTGATCCTGATAAGGAGAATTTGTGTCTGTATGGATTTCCGAGTGAGCAATGGGAGGTTAATTTACCTGCTGAAGAAGTGCCTCCAGAACTCCCAGAACCTGCTTTGGGCATTAACTTTGCCAGGGATGGAATGCAAGAGAAGGACTGGTTATCTTTAGTGGCTGTCCACAGTGATGCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTAGATTTGGATTTGATAGAGCTGACAGGAAGCAGCTTTTCAATATGATAAATGACCTCCCATCCATATTTGAAGTTGTAAGTGGCATTGCGAAGAAACAACAAAAGGAGAAATCTTCGGTCTCAAATCACAGTAGCAACAAATCCAAGTCAAACTCAAAAGTGCTGGAATCCGAATCGCAGGGAAGATATTCAAAACCACAGCCTAAGGAGGAAGAGGAGGGCTTGGACGAGGAAGACGAAGATGAGCACGGGGAGACCTTGTGCGGCGCATGTGGGGAGAATTATGCTTCGGATGAATTCTGGATATGCTGCGACATATGTGAGAAGTGGTTCCACGGCAAGTGTGTGAAGATTACACCAGCTAGGGCAGAGCATATCAAGCAGTACAAGTGCCCTTCTTGCAGCAACAAGAGAGCTCGCCCATGA

Network for GWHGAAZE031041

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12165.9	Alfin	16	143	2.90E-68
PF00628.30	PHD	204	252	1.90E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Alfin-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0042393	molecular_function	histone binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.737
	SRR3591706	second leaf	9.159
	SRR3591707	mature leaf	6.118
	SRR3591708	Shoot apex	18.052
	SRR3591709	Stem	6.617
	SRR3591710	White floral bud	13.175
	SRR3591711	White flower	9.263
	SRR3591712	Green floral bud	9.407
	SRR3591713	Yellow flower	3.689
SRP173429	SRR8316895	Juvenile bud stage	12.413
	SRR8316896	Juvenile bud stage	15.630
	SRR8316897	Juvenile bud stage	7.667
	SRR8316894	Third green stage	4.020
	SRR8316900	Third green stage	12.173
	SRR8316901	Third green stage	11.492
	SRR8316898	Complete white stage	1.924
	SRR8316899	Complete white stage	14.707
	SRR8316903	Complete white stage	4.222
	SRR8316902	Silver flowering stage	1.712
	SRR8316904	Silver flowering stage	2.482
	SRR8316905	Silver flowering stage	0.461
	SRR8316906	Gold flowering stage	3.062
	SRR8316907	Gold flowering stage	3.253
	SRR8316908	Gold flowering stage	2.486
SRP132670	SRR6706286	Control	8.877
	SRR6706287	Light intensity 50%	8.052
	SRR6706288	Light intensity 20%	9.460
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.807
	CNS0095593	Slightly white alabastrum(diploid) 2	13.309
	CNS0095594	Slightly white alabastrum(diploid) 3	17.019
	CNS0095595	Whole white alabastrum(diploid) 2	10.694
	CNS0095596	Whole white alabastrum(diploid) 3	8.465
	CNS0095597	Whole white alabastrum(diploid) 4	9.239
	CNS0095598	Silvery flower (diploied) 1	19.621
	CNS0095599	Silvery flower (diploied) 2	12.991
	CNS0095600	Silvery flower (diploied) 3	7.705
	CNS0095601	Golden flower (diploid) 1	17.660
	CNS0095602	Golden flower (diploid) 2	8.720
	CNS0095603	Golden flower (diploid) 3	9.665
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.865
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.708
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.699
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.712
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.045
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.542
	CNS0095610	Silvery flower (tetraploid) 1	10.405
	CNS0095611	Silvery flower (tetraploid) 2	10.326
	CNS0095612	Silvery flower (tetraploid) 3	5.746
	CNS0095613	Golden flower (tetraploid) 1	9.342
	CNS0095614	Golden flower (tetraploid) 2	10.301
	CNS0095615	Golden flower (tetraploid) 3	2.950
CRA001975	CRR073297	Stem 1	15.710
	CRR073298	Stem 2	16.145
	CRR073299	Stem 3	15.502
	CRR073300	Leaf 1	11.706
	CRR073301	Leaf 2	9.304
	CRR073302	Leaf 3	8.607
	CRR073303	Juvenile bud 1	5.074
	CRR073304	Juvenile bud 2	3.406
	CRR073305	Juvenile bud 3	7.975
	CRR073306	Third green 1	0.804
	CRR073307	Third green 2	0.527
	CRR073308	Third green 3	0.572
	CRR073309	Second white 1	0.534
	CRR073310	Second white 2	0.055
	CRR073311	Second white 3	0.780
	CRR073312	Silver flowering 1	0.530
	CRR073313	Silver flowering 2	0.722
	CRR073314	Silver flowering 3	0.861
	CRR073315	Gold flowering 1	10.291
	CRR073316	Gold flowering 2	14.007
	CRR073317	Gold flowering 3	13.546
	CRR073318	Tawny withering 1	8.608
	CRR073319	Tawny withering 2	11.889
	CRR073320	Tawny withering 3	10.749