Gene detail

Detail information of GWHGAAZE031046

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011081626.1	1.3067E-118	PREDICTED: 40S ribosomal protein S3-2 [Sesamum indicum]
COG	YP_004004418.1	7E-25	30S ribosomal protein S3
Swissprot	tr\|Q9M339\|RS32_ARATH	3E-115	40S ribosomal protein S3-2
trEMBL	tr\|K3ZWL4\|K3ZWL4_SETIT	2E-118	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si030996m}
TAIR10	AT3G53870.1	1E-90	Ribosomal protein S3 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	52263502	52265964	-
GWHAAZE00000009	mRNA	52263502	52265964	-
GWHAAZE00000009	exon	52263502	52263681	-
GWHAAZE00000009	exon	52264074	52264157	-
GWHAAZE00000009	exon	52264280	52264334	-
GWHAAZE00000009	exon	52265380	52265551	-
GWHAAZE00000009	exon	52265616	52265832	-
GWHAAZE00000009	exon	52265929	52265964	-
GWHAAZE00000009	CDS	52265929	52265964	-
GWHAAZE00000009	CDS	52265616	52265832	-
GWHAAZE00000009	CDS	52265380	52265551	-
GWHAAZE00000009	CDS	52264280	52264334	-
GWHAAZE00000009	CDS	52264074	52264157	-
GWHAAZE00000009	CDS	52263502	52263681	-

Transcript Sequence
>GWHTAAZE031080 ATGTCGACGACTCAACCTATAAGCAAGAAGCAAAAGTTCGTGGCGGATGGAGTGTTTTTTGCTGAACTCAACCAGCTTCTCACGAATGAGCTTGCTGAGGATGGTTATTCTGGCGTTGAAGTTAGGGTTACACCAATGCGCACTGAAATCATTATAAGAGCTACTCGCACTCAGAACGTTCTAGGTATATTGAGTATATAATATATATATATATGGATTTGTATTCAAAATCACCCCACCCCTACCCCTTCAGGTGAGAAGGGAAGGAGAATAAGGGAATTAACATCAGTAGTACAGAAGAGGTTTAATTTTCCAGAGAAGAGTGTGGAGCTTTATGCCGAGAAGGTTAGCAACAGAGGCCTTTGTGCTATTGCTCAGGCTGAGTCTCTCCGTTATAAGCTCCTCGGTGGCCTCCCTGTCCGCAGAGCTTGCTACGGTGTGCTAAAATTTGTGATGGGTAGCGGAGCAAAGGGTTGCGAGGTGGTAGTCAGTGGAAAGATTAGGGCTCAGCGAGCAAAATCAATGAAGTTCAAGGATGGTTACATGATAGCCTCTGGTCAGCCCGGTGTTCTAGGTATAAAAGTGAGGATTATGCTGGAATGGGATGCCAAAGGGATTCAGGGACCGAAGACACCCTTACCGGATGTAGTTACGATTCACCCACCCAAGCCCAAGGAGCAGGAGGAAGAGCAACAACAATCCATTGTGCCAGTTGAAATTGAGGTTGCGGCACAAGTAGCTTAA

Network for GWHGAAZE031046

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00189.21	Ribosomal_S3_C	130	183	3.40E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02985	RP-S3e, RPS3	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0003735	molecular_function	structural constituent of ribosome
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.045
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.319
	SRR3591713	Yellow flower	0.002
SRP173429	SRR8316895	Juvenile bud stage	4.099
	SRR8316896	Juvenile bud stage	5.116
	SRR8316897	Juvenile bud stage	1.227
	SRR8316894	Third green stage	0.825
	SRR8316900	Third green stage	0.294
	SRR8316901	Third green stage	0.347
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.180
	SRR6706287	Light intensity 50%	0.231
	SRR6706288	Light intensity 20%	0.066
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.887
	CNS0095593	Slightly white alabastrum(diploid) 2	1.110
	CNS0095594	Slightly white alabastrum(diploid) 3	1.894
	CNS0095595	Whole white alabastrum(diploid) 2	0.187
	CNS0095596	Whole white alabastrum(diploid) 3	0.196
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.102
	CNS0095599	Silvery flower (diploied) 2	0.333
	CNS0095600	Silvery flower (diploied) 3	0.166
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.123
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.063
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.759
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.506
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.915
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.125
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.049
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.892
	CRR073298	Stem 2	1.369
	CRR073299	Stem 3	3.479
	CRR073300	Leaf 1	0.371
	CRR073301	Leaf 2	0.054
	CRR073302	Leaf 3	0.684
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.067
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.009
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.011
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.086
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000