Detail information of GWHGAAZE031048


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002299594.11.52621E-13transcription initiation factor IID subunit A family protein [Populus trichocarpa]
Swissprottr|Q940A7|TA12B_ARATH0.000003Transcription initiation factor TFIID subunit 12b
trEMBLtr|B9GKV4|B9GKV4_POPTR6E-14Transcription initiation factor IID subunit A family protein {ECO:0000313|EMBL:EEE84399.1}

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5229289652293510+
GWHAAZE00000009mRNA5229289652293510+
GWHAAZE00000009exon5229289652293510+
GWHAAZE00000009CDS5229289652293510+
Transcript Sequence

Network for GWHGAAZE031048

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0273


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03126TAF12 Basal transcription factors map03022

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.898
SRR3591706second leaf18.262
SRR3591707mature leaf21.129
SRR3591708Shoot apex20.184
SRR3591709Stem22.998
SRR3591710White floral bud31.492
SRR3591711White flower36.202
SRR3591712Green floral bud33.644
SRR3591713Yellow flower24.789
SRP173429 SRR8316895Juvenile bud stage 13.622
SRR8316896Juvenile bud stage 15.718
SRR8316897Juvenile bud stage 9.289
SRR8316894Third green stage 10.769
SRR8316900Third green stage 25.275
SRR8316901Third green stage 22.975
SRR8316898Complete white stage 9.224
SRR8316899Complete white stage 38.932
SRR8316903Complete white stage 25.152
SRR8316902Silver flowering stage12.885
SRR8316904Silver flowering stage22.272
SRR8316905Silver flowering stage10.365
SRR8316906Gold flowering stage 33.267
SRR8316907Gold flowering stage 27.357
SRR8316908Gold flowering stage 35.865
SRP132670SRR6706286Control49.209
SRR6706287Light intensity 50%50.872
SRR6706288Light intensity 20%50.381
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.354
CNS0095593Slightly white alabastrum(diploid) 27.684
CNS0095594Slightly white alabastrum(diploid) 37.040
CNS0095595Whole white alabastrum(diploid) 211.888
CNS0095596Whole white alabastrum(diploid) 39.622
CNS0095597Whole white alabastrum(diploid) 410.862
CNS0095598Silvery flower (diploied) 117.387
CNS0095599Silvery flower (diploied) 28.860
CNS0095600Silvery flower (diploied) 332.663
CNS0095601Golden flower (diploid) 111.024
CNS0095602Golden flower (diploid) 231.548
CNS0095603Golden flower (diploid) 332.283
CNS0095604Slightly white alabastrum(tetraploid) 115.672
CNS0095605Slightly white alabastrum(tetraploid) 29.555
CNS0095606Slightly white alabastrum(tetraploid) 341.280
CNS0095607Whole white alabastrum(tetraploid) 110.264
CNS0095608Whole white alabastrum(tetraploid) 28.512
CNS0095609Whole white alabastrum(tetraploid) 321.166
CNS0095610Silvery flower (tetraploid) 137.826
CNS0095611Silvery flower (tetraploid) 232.534
CNS0095612Silvery flower (tetraploid) 333.686
CNS0095613Golden flower (tetraploid) 112.087
CNS0095614Golden flower (tetraploid) 225.967
CNS0095615Golden flower (tetraploid) 330.095
CRA001975CRR073297Stem 135.284
CRR073298Stem 234.804
CRR073299Stem 324.986
CRR073300Leaf 135.436
CRR073301Leaf 233.675
CRR073302Leaf 326.808
CRR073303Juvenile bud 124.008
CRR073304Juvenile bud 219.425
CRR073305Juvenile bud 341.868
CRR073306Third green 17.941
CRR073307Third green 26.398
CRR073308Third green 313.440
CRR073309Second white 19.144
CRR073310Second white 28.669
CRR073311Second white 315.383
CRR073312Silver flowering 113.083
CRR073313Silver flowering 27.778
CRR073314Silver flowering 35.912
CRR073315Gold flowering 113.450
CRR073316Gold flowering 233.002
CRR073317Gold flowering 324.199
CRR073318Tawny withering 117.229
CRR073319Tawny withering 27.304
CRR073320Tawny withering 318.673