Detail information of GWHGAAZE031050


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG30829.19.47019E-26Taf12 [Gossypium arboreum]
Swissprottr|Q940A7|TA12B_ARATH2E-19Transcription initiation factor TFIID subunit 12b
trEMBLtr|A0A061GJJ3|A0A061GJJ3_THECC3E-25Transcription initiation factor TFIID subunit A isoform 1 {ECO:0000313|EMBL:EOY27229.1}
TAIR10AT1G17440.24E-13Transcription initiation factor TFIID subunit A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5229810652299276+
GWHAAZE00000009mRNA5229810652299276+
GWHAAZE00000009exon5229810652298198+
GWHAAZE00000009exon5229829752298475+
GWHAAZE00000009exon5229907452299276+
GWHAAZE00000009CDS5229810652298198+
GWHAAZE00000009CDS5229829752298475+
GWHAAZE00000009CDS5229907452299146+
GWHAAZE00000009three_prime_UTR5229914752299276+
Transcript Sequence

Network for GWHGAAZE031050

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03126TAF12 Basal transcription factors map03022

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.382
SRR3591706second leaf17.359
SRR3591707mature leaf19.605
SRR3591708Shoot apex27.305
SRR3591709Stem39.088
SRR3591710White floral bud31.946
SRR3591711White flower33.124
SRR3591712Green floral bud40.334
SRR3591713Yellow flower25.705
SRP173429 SRR8316895Juvenile bud stage 13.939
SRR8316896Juvenile bud stage 18.677
SRR8316897Juvenile bud stage 8.691
SRR8316894Third green stage 9.659
SRR8316900Third green stage 27.995
SRR8316901Third green stage 29.205
SRR8316898Complete white stage 8.079
SRR8316899Complete white stage 47.480
SRR8316903Complete white stage 17.472
SRR8316902Silver flowering stage14.976
SRR8316904Silver flowering stage17.535
SRR8316905Silver flowering stage8.944
SRR8316906Gold flowering stage 25.035
SRR8316907Gold flowering stage 23.781
SRR8316908Gold flowering stage 27.580
SRP132670SRR6706286Control18.849
SRR6706287Light intensity 50%19.777
SRR6706288Light intensity 20%21.436
CNP0000432CNS0095592Slightly white alabastrum(diploid) 130.319
CNS0095593Slightly white alabastrum(diploid) 238.679
CNS0095594Slightly white alabastrum(diploid) 323.652
CNS0095595Whole white alabastrum(diploid) 231.773
CNS0095596Whole white alabastrum(diploid) 323.727
CNS0095597Whole white alabastrum(diploid) 425.844
CNS0095598Silvery flower (diploied) 134.597
CNS0095599Silvery flower (diploied) 226.747
CNS0095600Silvery flower (diploied) 328.913
CNS0095601Golden flower (diploid) 126.776
CNS0095602Golden flower (diploid) 230.714
CNS0095603Golden flower (diploid) 328.339
CNS0095604Slightly white alabastrum(tetraploid) 125.812
CNS0095605Slightly white alabastrum(tetraploid) 224.014
CNS0095606Slightly white alabastrum(tetraploid) 341.964
CNS0095607Whole white alabastrum(tetraploid) 117.090
CNS0095608Whole white alabastrum(tetraploid) 220.800
CNS0095609Whole white alabastrum(tetraploid) 322.583
CNS0095610Silvery flower (tetraploid) 130.285
CNS0095611Silvery flower (tetraploid) 227.983
CNS0095612Silvery flower (tetraploid) 333.318
CNS0095613Golden flower (tetraploid) 127.526
CNS0095614Golden flower (tetraploid) 230.630
CNS0095615Golden flower (tetraploid) 327.385
CRA001975CRR073297Stem 124.735
CRR073298Stem 226.556
CRR073299Stem 319.743
CRR073300Leaf 129.163
CRR073301Leaf 235.818
CRR073302Leaf 325.896
CRR073303Juvenile bud 137.264
CRR073304Juvenile bud 218.735
CRR073305Juvenile bud 344.859
CRR073306Third green 19.143
CRR073307Third green 210.524
CRR073308Third green 312.874
CRR073309Second white 19.247
CRR073310Second white 211.651
CRR073311Second white 313.105
CRR073312Silver flowering 110.271
CRR073313Silver flowering 28.988
CRR073314Silver flowering 39.019
CRR073315Gold flowering 126.370
CRR073316Gold flowering 231.917
CRR073317Gold flowering 327.342
CRR073318Tawny withering 140.728
CRR073319Tawny withering 240.512
CRR073320Tawny withering 340.487