Detail information of GWHGAAZE031056


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO97852.14.4757E-169unnamed protein product [Coffea canephora]
Swissprottr|Q4VYC8|NSP1_MEDTR4E-153Nodulation-signaling pathway 1 protein
trEMBLtr|A0A068TP92|A0A068TP92_COFCA2E-169Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO97852.1}
TAIR10AT3G13840.11E-75GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5236862852369836+
GWHAAZE00000009mRNA5236862852369836+
GWHAAZE00000009exon5236862852369836+
GWHAAZE00000009CDS5236862852369836+
Transcript Sequence

Network for GWHGAAZE031056

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS1574017.30E-49
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.949
SRR3591706second leaf0.076
SRR3591707mature leaf0.826
SRR3591708Shoot apex0.201
SRR3591709Stem1.996
SRR3591710White floral bud2.056
SRR3591711White flower0.976
SRR3591712Green floral bud0.144
SRR3591713Yellow flower1.877
SRP173429 SRR8316895Juvenile bud stage 3.301
SRR8316896Juvenile bud stage 3.231
SRR8316897Juvenile bud stage 3.151
SRR8316894Third green stage 0.525
SRR8316900Third green stage 0.693
SRR8316901Third green stage 0.861
SRR8316898Complete white stage 0.625
SRR8316899Complete white stage 3.176
SRR8316903Complete white stage 1.054
SRR8316902Silver flowering stage0.280
SRR8316904Silver flowering stage0.810
SRR8316905Silver flowering stage0.162
SRR8316906Gold flowering stage 0.319
SRR8316907Gold flowering stage 0.348
SRR8316908Gold flowering stage 0.299
SRP132670SRR6706286Control1.683
SRR6706287Light intensity 50%2.049
SRR6706288Light intensity 20%1.822
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.689
CNS0095593Slightly white alabastrum(diploid) 21.938
CNS0095594Slightly white alabastrum(diploid) 32.657
CNS0095595Whole white alabastrum(diploid) 22.425
CNS0095596Whole white alabastrum(diploid) 30.653
CNS0095597Whole white alabastrum(diploid) 41.577
CNS0095598Silvery flower (diploied) 16.398
CNS0095599Silvery flower (diploied) 29.466
CNS0095600Silvery flower (diploied) 33.398
CNS0095601Golden flower (diploid) 16.754
CNS0095602Golden flower (diploid) 27.235
CNS0095603Golden flower (diploid) 36.679
CNS0095604Slightly white alabastrum(tetraploid) 11.024
CNS0095605Slightly white alabastrum(tetraploid) 21.067
CNS0095606Slightly white alabastrum(tetraploid) 33.160
CNS0095607Whole white alabastrum(tetraploid) 11.182
CNS0095608Whole white alabastrum(tetraploid) 20.086
CNS0095609Whole white alabastrum(tetraploid) 30.486
CNS0095610Silvery flower (tetraploid) 10.859
CNS0095611Silvery flower (tetraploid) 21.103
CNS0095612Silvery flower (tetraploid) 31.212
CNS0095613Golden flower (tetraploid) 10.178
CNS0095614Golden flower (tetraploid) 20.816
CNS0095615Golden flower (tetraploid) 30.991
CRA001975CRR073297Stem 11.160
CRR073298Stem 22.353
CRR073299Stem 31.752
CRR073300Leaf 12.204
CRR073301Leaf 23.378
CRR073302Leaf 31.238
CRR073303Juvenile bud 12.089
CRR073304Juvenile bud 22.653
CRR073305Juvenile bud 35.000
CRR073306Third green 10.930
CRR073307Third green 21.389
CRR073308Third green 34.529
CRR073309Second white 10.369
CRR073310Second white 21.833
CRR073311Second white 30.780
CRR073312Silver flowering 10.064
CRR073313Silver flowering 21.097
CRR073314Silver flowering 31.051
CRR073315Gold flowering 10.310
CRR073316Gold flowering 21.008
CRR073317Gold flowering 31.070
CRR073318Tawny withering 13.126
CRR073319Tawny withering 23.916
CRR073320Tawny withering 32.915