Detail information of GWHGAAZE031061


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008228184.10PREDICTED: uncharacterized protein LOC103327621 [Prunus mume]
COGNP_622821.11E-92guanosine polyphosphate pyrophosphohydrolase/synthetase
Swissprottr|Q9SYH1|RSH3C_ARATH0Probable GTP diphosphokinase RSH3, chloroplastic (Precursor)
trEMBLtr|F6HXV9|F6HXV9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB59284.1}
TAIR10AT1G54130.10RELA/SPOT homolog 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5241886252422751-
GWHAAZE00000009mRNA5241886252422751-
GWHAAZE00000009exon5241886252419152-
GWHAAZE00000009exon5241943652419769-
GWHAAZE00000009exon5241984752420005-
GWHAAZE00000009exon5242031752420777-
GWHAAZE00000009exon5242171152421896-
GWHAAZE00000009exon5242200552422751-
GWHAAZE00000009CDS5242200552422751-
GWHAAZE00000009CDS5242171152421896-
GWHAAZE00000009CDS5242031752420777-
GWHAAZE00000009CDS5241984752420005-
GWHAAZE00000009CDS5241943652419769-
GWHAAZE00000009CDS5241886252419152-
Transcript Sequence

Network for GWHGAAZE031061

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13328.7HD_42403928.40E-40
PF04607.18RelA_SpoT4515607.20E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00951relA Metabolic pathways map01100
Purine metabolismmap00230

Gene Ontology

GO term OntologyName
GO:0015969biological_processguanosine tetraphosphate metabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.307
SRR3591706second leaf11.737
SRR3591707mature leaf20.662
SRR3591708Shoot apex9.990
SRR3591709Stem30.102
SRR3591710White floral bud39.998
SRR3591711White flower108.649
SRR3591712Green floral bud20.963
SRR3591713Yellow flower111.403
SRP173429 SRR8316895Juvenile bud stage 19.856
SRR8316896Juvenile bud stage 20.333
SRR8316897Juvenile bud stage 20.039
SRR8316894Third green stage 6.952
SRR8316900Third green stage 17.534
SRR8316901Third green stage 19.895
SRR8316898Complete white stage 13.431
SRR8316899Complete white stage 29.637
SRR8316903Complete white stage 23.589
SRR8316902Silver flowering stage57.793
SRR8316904Silver flowering stage79.926
SRR8316905Silver flowering stage43.298
SRR8316906Gold flowering stage 198.828
SRR8316907Gold flowering stage 156.229
SRR8316908Gold flowering stage 231.425
SRP132670SRR6706286Control17.737
SRR6706287Light intensity 50%19.605
SRR6706288Light intensity 20%19.417
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.304
CNS0095593Slightly white alabastrum(diploid) 221.383
CNS0095594Slightly white alabastrum(diploid) 318.019
CNS0095595Whole white alabastrum(diploid) 214.581
CNS0095596Whole white alabastrum(diploid) 310.492
CNS0095597Whole white alabastrum(diploid) 416.404
CNS0095598Silvery flower (diploied) 140.129
CNS0095599Silvery flower (diploied) 240.476
CNS0095600Silvery flower (diploied) 392.334
CNS0095601Golden flower (diploid) 145.031
CNS0095602Golden flower (diploid) 2104.096
CNS0095603Golden flower (diploid) 399.281
CNS0095604Slightly white alabastrum(tetraploid) 115.264
CNS0095605Slightly white alabastrum(tetraploid) 214.864
CNS0095606Slightly white alabastrum(tetraploid) 320.974
CNS0095607Whole white alabastrum(tetraploid) 115.397
CNS0095608Whole white alabastrum(tetraploid) 217.921
CNS0095609Whole white alabastrum(tetraploid) 322.139
CNS0095610Silvery flower (tetraploid) 1102.302
CNS0095611Silvery flower (tetraploid) 273.788
CNS0095612Silvery flower (tetraploid) 388.181
CNS0095613Golden flower (tetraploid) 197.543
CNS0095614Golden flower (tetraploid) 287.057
CNS0095615Golden flower (tetraploid) 3171.068
CRA001975CRR073297Stem 117.426
CRR073298Stem 216.603
CRR073299Stem 315.224
CRR073300Leaf 121.626
CRR073301Leaf 221.553
CRR073302Leaf 315.586
CRR073303Juvenile bud 116.257
CRR073304Juvenile bud 221.986
CRR073305Juvenile bud 324.126
CRR073306Third green 153.063
CRR073307Third green 247.276
CRR073308Third green 350.246
CRR073309Second white 179.039
CRR073310Second white 2116.686
CRR073311Second white 3140.731
CRR073312Silver flowering 1195.693
CRR073313Silver flowering 2163.685
CRR073314Silver flowering 3167.589
CRR073315Gold flowering 121.399
CRR073316Gold flowering 243.488
CRR073317Gold flowering 327.361
CRR073318Tawny withering 124.349
CRR073319Tawny withering 259.108
CRR073320Tawny withering 327.701