Gene detail

Detail information of GWHGAAZE031065

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011072417.1	4.2418E-157	PREDICTED: nuclear pore complex protein NUP35 [Sesamum indicum]
Swissprot	tr\|O04326\|NUP35_ARATH	4E-129	Nuclear pore complex protein NUP35 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|A0A068TPY0\|A0A068TPY0_COFCA	2E-154	Nuclear pore complex protein NUP35 {ECO:0000256\|PIRNR:PIRNR038119}
TAIR10	AT3G16310.1	2E-91	mitotic phosphoprotein N' end (MPPN) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	52477678	52480946	-
GWHAAZE00000009	mRNA	52477678	52480946	-
GWHAAZE00000009	exon	52480323	52480946	-
GWHAAZE00000009	exon	52479547	52479640	-
GWHAAZE00000009	exon	52478162	52478199	-
GWHAAZE00000009	exon	52477678	52477992	-
GWHAAZE00000009	CDS	52480323	52480946	-
GWHAAZE00000009	CDS	52479547	52479640	-
GWHAAZE00000009	CDS	52478162	52478199	-
GWHAAZE00000009	CDS	52477678	52477992	-

Transcript Sequence
>GWHTAAZE031099 ATGAGCTCGACAGTACGAAGAACTCCCAAATCTGGAAGACAATCACTATTCTTCCAGGATCTAGCCTCACCGGTTTCCACCCGCAGAGGCGGAGGAAAATTCACAACCCCGGGCCAAGCAGCCGCAGTTTCCGCCCTATGGCGTGAAAATTTCTCAAATTCCGATCTCCCTCCACCTCCAATGTTCACCCTCGAAGACCGCTCAGACTTTTCCCCGGAATCAGGAATTCCAGATTATCCTACTTCTCCGGAAATCAAATCCGATCCTAGAACACCGGTCCAGAGTTTCGGCAAGGACAATTTGACTCCTAAGAGCAAGTCTGAGGCAAGTACTTCGTATGCTCTGTTGGGGAAGCAGCACCAGAACAGGCAGAGCCCGGCCGCTACTTCGAGTTGGTGGTCACCTGCAGGTGCAAAGAGCGGTGGTGGTGGTAGTGGGGAGCATGATGATAAAGGGAAGGGTTCTCCTGTTGATGGGGTGGTTCAACCTGGGGCATTAATTACACTTCCTCCTCCAAGGGAGGTTGCCAGGCCAGAGATGCGGAAGAATTCTTTGACCGTAGGTCACCTTGACGAGGAAGAATGGGTGACTGTTTACGGGTATGTTCTAAATTTGGGCTTTCTGCCCATTACCCTCTACCTCTCTTATGCGATCTCCAAGCTTGTTTTCTCACTTTCAGTTTTCACCTTCTTACTAACCGGCGATGCTCATGACCAAGGCCCTAGAGATGCTAATTGGATGCACATTCTCTATCAGAATCATTCTGACGCACAGAAGGCTCTGAGCAAGAACGGAATGCAAATAAATGGAGCTCTAATAGTAGGGGTGAAGCCTGTGGATCCAATGCAAAGGCAAACTCTGAATGAAAGGCTCAACAACAATCATGGATTCATGACATTATCTCCGTCACCATATAGTAGCTCAGAACCAAATCCTTTGAGAGCCTCAACGAGCTCTTACTATTTTCAAAATGGCAGCAGCGGCAACAATGCGAGGCAGTCAGCAGGCACAATTGCCGCCCCTGCTAAATCTGTAGCCTCCAAAATCGTGGATTTGATGTTTGGCTTCTAG

Network for GWHGAAZE031065

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05172.14	Nup35_RRM	189	289	4.50E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14313	NUP35, NUP53	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006913	biological_process	nucleocytoplasmic transport
GO:0031965	cellular_component	nuclear membrane
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.714
	SRR3591706	second leaf	2.717
	SRR3591707	mature leaf	2.273
	SRR3591708	Shoot apex	4.156
	SRR3591709	Stem	4.109
	SRR3591710	White floral bud	5.090
	SRR3591711	White flower	6.725
	SRR3591712	Green floral bud	6.318
	SRR3591713	Yellow flower	3.246
SRP173429	SRR8316895	Juvenile bud stage	3.698
	SRR8316896	Juvenile bud stage	4.081
	SRR8316897	Juvenile bud stage	0.288
	SRR8316894	Third green stage	2.401
	SRR8316900	Third green stage	5.233
	SRR8316901	Third green stage	6.503
	SRR8316898	Complete white stage	3.538
	SRR8316899	Complete white stage	9.577
	SRR8316903	Complete white stage	2.334
	SRR8316902	Silver flowering stage	4.135
	SRR8316904	Silver flowering stage	3.641
	SRR8316905	Silver flowering stage	1.946
	SRR8316906	Gold flowering stage	6.139
	SRR8316907	Gold flowering stage	5.201
	SRR8316908	Gold flowering stage	1.907
SRP132670	SRR6706286	Control	9.660
	SRR6706287	Light intensity 50%	8.195
	SRR6706288	Light intensity 20%	8.907
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.055
	CNS0095593	Slightly white alabastrum(diploid) 2	5.319
	CNS0095594	Slightly white alabastrum(diploid) 3	4.522
	CNS0095595	Whole white alabastrum(diploid) 2	3.305
	CNS0095596	Whole white alabastrum(diploid) 3	4.073
	CNS0095597	Whole white alabastrum(diploid) 4	3.486
	CNS0095598	Silvery flower (diploied) 1	4.182
	CNS0095599	Silvery flower (diploied) 2	3.968
	CNS0095600	Silvery flower (diploied) 3	7.047
	CNS0095601	Golden flower (diploid) 1	3.268
	CNS0095602	Golden flower (diploid) 2	5.738
	CNS0095603	Golden flower (diploid) 3	5.677
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.257
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.239
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.035
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.589
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.022
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.696
	CNS0095610	Silvery flower (tetraploid) 1	1.202
	CNS0095611	Silvery flower (tetraploid) 2	1.172
	CNS0095612	Silvery flower (tetraploid) 3	0.676
	CNS0095613	Golden flower (tetraploid) 1	1.134
	CNS0095614	Golden flower (tetraploid) 2	0.935
	CNS0095615	Golden flower (tetraploid) 3	1.279
CRA001975	CRR073297	Stem 1	4.607
	CRR073298	Stem 2	6.460
	CRR073299	Stem 3	6.263
	CRR073300	Leaf 1	6.841
	CRR073301	Leaf 2	6.259
	CRR073302	Leaf 3	7.012
	CRR073303	Juvenile bud 1	6.540
	CRR073304	Juvenile bud 2	8.001
	CRR073305	Juvenile bud 3	6.366
	CRR073306	Third green 1	4.212
	CRR073307	Third green 2	3.410
	CRR073308	Third green 3	3.602
	CRR073309	Second white 1	4.807
	CRR073310	Second white 2	3.889
	CRR073311	Second white 3	5.035
	CRR073312	Silver flowering 1	3.951
	CRR073313	Silver flowering 2	2.673
	CRR073314	Silver flowering 3	1.924
	CRR073315	Gold flowering 1	5.769
	CRR073316	Gold flowering 2	5.434
	CRR073317	Gold flowering 3	3.942
	CRR073318	Tawny withering 1	6.577
	CRR073319	Tawny withering 2	4.804
	CRR073320	Tawny withering 3	7.738