Gene detail

Detail information of GWHGAAZE031067

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284003.2	3.6541E-106	PREDICTED: homeobox-leucine zipper protein ATHB-15 [Vitis vinifera]
Swissprot	tr\|Q9ZU11\|ATB15_ARATH	6E-95	Homeobox-leucine zipper protein ATHB-15
trEMBL	tr\|A5BKM1\|A5BKM1_VITVI	5E-105	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN65768.1}
TAIR10	AT1G52150.3	5E-82	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	52500260	52502273	+
GWHAAZE00000009	mRNA	52500260	52502273	+
GWHAAZE00000009	exon	52500260	52500468	+
GWHAAZE00000009	exon	52500753	52500912	+
GWHAAZE00000009	exon	52501066	52501171	+
GWHAAZE00000009	exon	52501284	52501370	+
GWHAAZE00000009	exon	52501993	52502071	+
GWHAAZE00000009	exon	52502180	52502273	+
GWHAAZE00000009	CDS	52500260	52500468	+
GWHAAZE00000009	CDS	52500753	52500912	+
GWHAAZE00000009	CDS	52501066	52501171	+
GWHAAZE00000009	CDS	52501284	52501370	+
GWHAAZE00000009	CDS	52501993	52502071	+
GWHAAZE00000009	CDS	52502180	52502273	+

Transcript Sequence
>GWHTAAZE031101 ATGATGGCAATGTCCTGCAAGGATGGTAAGGGAGTGATGGACAATGGCAAGTATGTCCGCTACACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTCTATCACGACTGCCCTAAACCCAGTTCTATTCGAAGGCAACAGCTCATTAGGGAATGCCCTATTCTCTCCAACATCGAGCCCAAACAAATCAAAGTTTGGTTCCAAAATCGAAGATGCAGGGAAAAACAGAGAAAAGAGGCTTCACGACTTCAAGCTGTGAATAGGAAACTGACTGCCATGAATAAGCTTTTAATGGAAGAAAATGATAGGTTGCAGAAGCAGGTGTCACACTTGGTGTATGAAAATGGCTACTTTCGCCAGCATACTCAGAATACTACGCTTCCGACCAAAGACACTAGTTGTGAGTCAGTGGTGACAAGTGGTCAACACCATTTGACGCCTCAGCAGCATCCGCCTAGAGATGCTAGTCCTGCAGAAGGCTATTGTCCATTGCAGAAGAGACTTAACGAGTTTCTCAAAGGCCACTGGGACCATTGTAGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATGGTTGCTATTCTCATGGTTGCACTGGTGTGGCAGCCGCGAGCCCGCGACCTGGTGGGTTGCAGAGATCCTCAAGGATAGGCCTTCATGGTTTGCATGATTGCCGAGCTGTGGATGTCCTCAGCGCTGCTACCCAATGGTGGAACCATTGA

Network for GWHGAAZE031067

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	17	75	5.30E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-other

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.972
	SRR3591706	second leaf	4.402
	SRR3591707	mature leaf	4.601
	SRR3591708	Shoot apex	15.698
	SRR3591709	Stem	49.689
	SRR3591710	White floral bud	10.979
	SRR3591711	White flower	8.221
	SRR3591712	Green floral bud	6.652
	SRR3591713	Yellow flower	4.455
SRP173429	SRR8316895	Juvenile bud stage	4.742
	SRR8316896	Juvenile bud stage	6.201
	SRR8316897	Juvenile bud stage	2.609
	SRR8316894	Third green stage	3.841
	SRR8316900	Third green stage	8.208
	SRR8316901	Third green stage	6.558
	SRR8316898	Complete white stage	2.800
	SRR8316899	Complete white stage	12.572
	SRR8316903	Complete white stage	5.921
	SRR8316902	Silver flowering stage	1.809
	SRR8316904	Silver flowering stage	4.324
	SRR8316905	Silver flowering stage	2.342
	SRR8316906	Gold flowering stage	6.216
	SRR8316907	Gold flowering stage	3.850
	SRR8316908	Gold flowering stage	4.296
SRP132670	SRR6706286	Control	5.717
	SRR6706287	Light intensity 50%	7.785
	SRR6706288	Light intensity 20%	7.637
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.539
	CNS0095593	Slightly white alabastrum(diploid) 2	2.711
	CNS0095594	Slightly white alabastrum(diploid) 3	1.528
	CNS0095595	Whole white alabastrum(diploid) 2	3.539
	CNS0095596	Whole white alabastrum(diploid) 3	1.311
	CNS0095597	Whole white alabastrum(diploid) 4	2.028
	CNS0095598	Silvery flower (diploied) 1	5.691
	CNS0095599	Silvery flower (diploied) 2	3.407
	CNS0095600	Silvery flower (diploied) 3	6.294
	CNS0095601	Golden flower (diploid) 1	3.701
	CNS0095602	Golden flower (diploid) 2	5.975
	CNS0095603	Golden flower (diploid) 3	5.426
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.992
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.270
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.514
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.887
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.392
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.569
	CNS0095610	Silvery flower (tetraploid) 1	6.845
	CNS0095611	Silvery flower (tetraploid) 2	5.173
	CNS0095612	Silvery flower (tetraploid) 3	3.430
	CNS0095613	Golden flower (tetraploid) 1	2.401
	CNS0095614	Golden flower (tetraploid) 2	5.187
	CNS0095615	Golden flower (tetraploid) 3	4.144
CRA001975	CRR073297	Stem 1	7.738
	CRR073298	Stem 2	8.926
	CRR073299	Stem 3	3.987
	CRR073300	Leaf 1	9.383
	CRR073301	Leaf 2	6.826
	CRR073302	Leaf 3	1.512
	CRR073303	Juvenile bud 1	2.694
	CRR073304	Juvenile bud 2	1.631
	CRR073305	Juvenile bud 3	3.057
	CRR073306	Third green 1	0.760
	CRR073307	Third green 2	0.792
	CRR073308	Third green 3	0.529
	CRR073309	Second white 1	0.580
	CRR073310	Second white 2	0.792
	CRR073311	Second white 3	0.302
	CRR073312	Silver flowering 1	0.437
	CRR073313	Silver flowering 2	0.179
	CRR073314	Silver flowering 3	0.289
	CRR073315	Gold flowering 1	0.725
	CRR073316	Gold flowering 2	1.628
	CRR073317	Gold flowering 3	0.971
	CRR073318	Tawny withering 1	10.845
	CRR073319	Tawny withering 2	10.220
	CRR073320	Tawny withering 3	23.677