Gene detail

Detail information of GWHGAAZE031087

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099534.1	7.54822E-68	PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X4 [Sesamum indicum]
Swissprot	tr\|P0C5E2\|Y1839_ARATH	7E-23	Probable serine/threonine-protein kinase At1g18390 (Precursor)
trEMBL	tr\|K4BBD6\|K4BBD6_SOLLC	1E-63	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g086280.2.1}
TAIR10	AT1G66880.1	2E-26	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	52878739	52893287	-
GWHAAZE00000009	mRNA	52878739	52893287	-
GWHAAZE00000009	exon	52892700	52893287	-
GWHAAZE00000009	exon	52892540	52892596	-
GWHAAZE00000009	exon	52890758	52890894	-
GWHAAZE00000009	exon	52889288	52889350	-
GWHAAZE00000009	exon	52889148	52889187	-
GWHAAZE00000009	exon	52887917	52888180	-
GWHAAZE00000009	exon	52887671	52887806	-
GWHAAZE00000009	exon	52885556	52885945	-
GWHAAZE00000009	exon	52880792	52880824	-
GWHAAZE00000009	exon	52880355	52880699	-
GWHAAZE00000009	exon	52878739	52879118	-
GWHAAZE00000009	CDS	52892700	52893287	-
GWHAAZE00000009	CDS	52892540	52892596	-
GWHAAZE00000009	CDS	52890758	52890894	-
GWHAAZE00000009	CDS	52889288	52889350	-
GWHAAZE00000009	CDS	52889148	52889187	-
GWHAAZE00000009	CDS	52887917	52888180	-
GWHAAZE00000009	CDS	52887671	52887806	-
GWHAAZE00000009	CDS	52885556	52885945	-
GWHAAZE00000009	CDS	52880792	52880824	-
GWHAAZE00000009	CDS	52880355	52880699	-
GWHAAZE00000009	CDS	52878739	52879118	-

Transcript Sequence
>GWHTAAZE031121 ATGAATTCCCAAATTCTCCAATGGATTCCTCTCTTTTTGATCCTAAAACAACTAGTTTTGGTCTCAAGCAATCCATTATGGTACCAAACATGTGGTACAACGTACAACTGCGGCACCATAACCGGAATCCTGTATCCCTTCATTGGAAATAATGATCCACAATACTGTGGTTATCCCGGTTTAGAGCTAAACTGTAACCAGGATAACACCACCATTATCCAGATCATGAATATGGATTACCGCGTATTGGGTATTGATCAAACTACCCAGATCATGAAGATTGCTAGGGAGGATGTGATGGAATCTGTTTGTCCACGGGATTTAGTTAACACTACCCTGGATTACGAGCTATTCGATTATGCTTCTAATTATATGAACCTCACATTCATATATGGCTGCCCAACTTCAGCTAGACTTCCTGGATTTGTCTCTTGTGGAAGTGCTGGGAATGATGGTGTTTATGTGTTGCCTGGTGCTCAAGGACCCGGTAACTGTAATGCGAGTGTGGTGGTTCCTGTTCTTCAAACGGGTTCGCTTGGGCCAGTGAATTCGACGGGTTTAGATGAAGCTCTTCGGGCCGGGTTCGAGGTCCGCCTTATATGGCGGATACGTGCCCCAGAGGTAATGGAGCTCCACAACGTTCAGGCAGGTTCAATGGAGCCAACAATAGAAAAACGGTTAGACTGTTTAGAAGCTAAGTTGGCTACAATACATGTCAATCAAGAAAAAATATTAAGAGAGTTTGAGAAGATGCGCGTAGTTGCTGATAATGGCTTGACCAGGAGAGAGAGGGTTCAGAGTGACAATGATAAGTTGAAGATGGCAATGGCAATGATGGATGTAAGCGGATCTGATGGTGGTGGATCTAGTGGCAGAGATTTGATGAGTTCTTGGGCTGATTCTCAAACTCTCACCGTTGCTAGAGATGATTATTGGAATGAAACTTGCCCTGCTCATTTTGTTAATACAACCCTTAATTCGACACTCTTTAGTTATGCTCCTGGCCTTAGAAACTTGTCACTGTTCTATAACTGCACTTTCTTCTCGGACCCTCAATTAGGAGTTTCTGGTCAGCATCGTTGCACTATAAACAATACAGATATCAACTTTTTCTACGCGACAATTAATGTGCCACTTGATCCTCAGAAGTTGAATGTGAATTCTTCCCGGTGCAGAATATGTGTGGATTCTGGTGGGGAGTGCGGGTTTAATCAAACCGATAGTCAGTTTACTTGCTTTTGCCGTGATCGGGCTTACTCAAATGCTTGTTTTGCTACCGGACCAGCCCTGCTCTACGGGTGCACCCCGATCCTAGGCCAAGTCACACCTATTCCAAGCCAGTTTAACTGCACCATCAACGGAACCTTTAGTATCAATTATTTCACGGTCGATGCAGCTGTGGTTAGCAGTAACTTGGTGTTTTGTAGAAGTAGCGTTAGGGTACCCGTTAATGCAACGTCGGGTCAGGCTTTAGGTCGTATCGGGGTTACGACTGGGGACCTACAAGTGGCTCTGGCAAGTGGTTTTGGGGTTCAGTGGAATGCGAATAATAGCTTGTGTGACCAATGCAGAGGTTCAAGTGGGCGGTGTGGGTCGAACCCGGACTCGGATTCATTTGCTTGCTATTGTGCTGATGGGGTGTATGATACTAGATGTAACACAACAGATCAAAATGGCAATGGGAGATCTACAAGTGAAATTCGTGTAGTTCTTCCTGTAGTTGGCGCAATCCTTGCTGGAATTGGCCTCGGATGGTTATTCTTCTTCTGCAGACAAAGGAGAAAACGAAGGCTTGCTGCCCAAACTGCCTTAACTGCCCAAACGGAGAGCAAGGACCTTATGACTTCTCTTTCAAGCAAAGAGCTTTCTTCTACTCCTTCAGTTAAATTCACCCGAAGCATCCCTTCTTATCCCTCCTCGACAACCGAGTTTGGGAAAGCCAGCACTTATTTCGGAGTTCAAGTCTTTAGCTACGCTGAACTCGAAGAAGCTACTGAAAATTTCGACAGTTCTAGAGAACTTGGAGATGGTGGCTTTGGAACTGTCTACTATGTTGACACCAATAGGCACCGGCATGATATAAACTTGGCCAACATGGCCATAAGCAAGATCCAAAACCATACATTGGACGAGTTGGTGGATGCAGGTCTGGGGTTCAAGACTGATGGGTCAGTTAGGAGGATGACTACATTGGTGGCGGAGTTGGCTTTTCGGTGTTTGCAGCAAGAGAAGGATATGAGGCCTTCAATGAAGGAAGTTTTGGATACTTTGAGAGGGATACAAAATGAGGACTTGGATTCTCAGAAAGTAGAGGTGCTTGACATTGTTGTGGATGACAGATTGCCATTAAAGAGTAACCCTTCGCCAGATTCGTCTGATTCTGTTGTTACTGAAAAATGGGTTAGTAGCTCTGCGCCTAATTCTAGTGGTTAA

Network for GWHGAAZE031087

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13947.7	GUB_WAK_bind	31	96	1.50E-15
PF14380.7	WAK_assoc	384	416	7.20E-08
PF14380.7	WAK_assoc	470	546	2.00E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.063
	SRR3591706	second leaf	0.861
	SRR3591707	mature leaf	0.214
	SRR3591708	Shoot apex	0.885
	SRR3591709	Stem	4.000
	SRR3591710	White floral bud	0.516
	SRR3591711	White flower	1.042
	SRR3591712	Green floral bud	0.621
	SRR3591713	Yellow flower	1.327
SRP173429	SRR8316895	Juvenile bud stage	1.626
	SRR8316896	Juvenile bud stage	2.123
	SRR8316897	Juvenile bud stage	0.669
	SRR8316894	Third green stage	1.003
	SRR8316900	Third green stage	1.894
	SRR8316901	Third green stage	2.002
	SRR8316898	Complete white stage	0.798
	SRR8316899	Complete white stage	3.527
	SRR8316903	Complete white stage	1.962
	SRR8316902	Silver flowering stage	2.927
	SRR8316904	Silver flowering stage	3.284
	SRR8316905	Silver flowering stage	1.570
	SRR8316906	Gold flowering stage	6.286
	SRR8316907	Gold flowering stage	5.572
	SRR8316908	Gold flowering stage	5.846
SRP132670	SRR6706286	Control	1.702
	SRR6706287	Light intensity 50%	2.039
	SRR6706288	Light intensity 20%	2.208
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.829
	CNS0095593	Slightly white alabastrum(diploid) 2	1.761
	CNS0095594	Slightly white alabastrum(diploid) 3	1.846
	CNS0095595	Whole white alabastrum(diploid) 2	1.258
	CNS0095596	Whole white alabastrum(diploid) 3	0.712
	CNS0095597	Whole white alabastrum(diploid) 4	1.217
	CNS0095598	Silvery flower (diploied) 1	2.204
	CNS0095599	Silvery flower (diploied) 2	1.908
	CNS0095600	Silvery flower (diploied) 3	4.393
	CNS0095601	Golden flower (diploid) 1	2.929
	CNS0095602	Golden flower (diploid) 2	4.248
	CNS0095603	Golden flower (diploid) 3	4.185
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.584
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.893
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.153
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.569
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.789
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.441
	CNS0095610	Silvery flower (tetraploid) 1	1.329
	CNS0095611	Silvery flower (tetraploid) 2	1.891
	CNS0095612	Silvery flower (tetraploid) 3	1.694
	CNS0095613	Golden flower (tetraploid) 1	1.405
	CNS0095614	Golden flower (tetraploid) 2	1.228
	CNS0095615	Golden flower (tetraploid) 3	1.270
CRA001975	CRR073297	Stem 1	1.988
	CRR073298	Stem 2	1.954
	CRR073299	Stem 3	1.883
	CRR073300	Leaf 1	2.776
	CRR073301	Leaf 2	2.921
	CRR073302	Leaf 3	1.781
	CRR073303	Juvenile bud 1	2.593
	CRR073304	Juvenile bud 2	2.423
	CRR073305	Juvenile bud 3	2.040
	CRR073306	Third green 1	9.161
	CRR073307	Third green 2	6.512
	CRR073308	Third green 3	7.186
	CRR073309	Second white 1	7.780
	CRR073310	Second white 2	6.011
	CRR073311	Second white 3	4.190
	CRR073312	Silver flowering 1	10.519
	CRR073313	Silver flowering 2	10.749
	CRR073314	Silver flowering 3	7.861
	CRR073315	Gold flowering 1	1.425
	CRR073316	Gold flowering 2	2.208
	CRR073317	Gold flowering 3	2.424
	CRR073318	Tawny withering 1	6.021
	CRR073319	Tawny withering 2	7.101
	CRR073320	Tawny withering 3	3.938