Gene detail

Detail information of GWHGAAZE031095

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006488575.1	0	PREDICTED: ubiquitin-activating enzyme E1 1-like [Citrus sinensis]
COG	YP_008797957.1	1E-23	ubiquitin-activating enzyme E1-like protein
Swissprot	tr\|P92974\|UBE12_ARATH	0	Ubiquitin-activating enzyme E1 2
trEMBL	tr\|V4RUK9\|V4RUK9_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR38378.1}
TAIR10	AT5G06460.1	0	ubiquitin activating enzyme 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	53064260	53068163	-
GWHAAZE00000009	mRNA	53064260	53068163	-
GWHAAZE00000009	exon	53064260	53064340	-
GWHAAZE00000009	exon	53065002	53065110	-
GWHAAZE00000009	exon	53065185	53065433	-
GWHAAZE00000009	exon	53065825	53066693	-
GWHAAZE00000009	exon	53067357	53068163	-
GWHAAZE00000009	CDS	53067357	53068163	-
GWHAAZE00000009	CDS	53065825	53066693	-
GWHAAZE00000009	CDS	53065185	53065433	-
GWHAAZE00000009	CDS	53065002	53065110	-
GWHAAZE00000009	CDS	53064260	53064340	-

Transcript Sequence
>GWHTAAZE031129 ATGGCACTGCAGGCTGTGGTTTTTACTAACATCGACTTAGAGACTGCAATTGCATTTGATGATTACTGTCATAGTCATCAACCTCCTATAGCATTCATCAAAGCCGAAGTAAGAGGGCTTTTTGGTAACGTCTTCTGTGATTTTGGACCCAAATTTACTGTTGTCGATGTTGATGGCGAGGAACCTCACACTGGCATTATTGCATCCATCAGTAACGATAATCCTGCACTCGTCTCTTGTGTTGATGATGAAAGGCTCGAATTTCAAGAGGGTGATCTTGTTGTGTTCTCTGAAGTTCGGGGAATGACAGAACTCCACGATGGAAAGCCCCGAAAGATAATAAATGCAAGGCCCTACTCTATCACCCTTGAAGAGGACACTACTAATTTCGGTGCATATGAGAGAGGTGGTATTGTCACTCAGGTGAAGCAGCCCAAGACACTGAATTTCAAGCCATTGAGAGAAGCACTCAAAGAACCTGGTGATTTTCTGCTGAGTGATTTCTCCAAGTTTGACCGACCTCCTCTCTTGCACTTGGCATTCCAAGCGCTTGACAAGTTTTTGTCTGAATTGGGACGTTTCCCGGTTGCTGGTTTGGAAGATGATGCGCAGAAGCTTATTTCTATAGCCAGTAATCTCAATGAGAGCTTGGGTGATGGCAAACTGGAAGATATTAACTCGAAAGTTCTACGGCACTTTGCCTTTGGTGCCCGTGCTGTACTGAATCCTATGGCTGCAATGTTTGGTGGTATTGTTGGTCAGGAGGTTATGAAGGCATGCTCTGGAAAGTTCCATCCACTTTTTCAGTTCTTCTACTTCGACTCGGTTGAGTCACTTCCCACTGAGGCAGTAGAACCAACCGAATTGAGACCATTGAACAGCCGTTATGATGCACAAATTTCAGTGTTTGGGTCTAAACTTCAGAAAAAACTGGAAGATGCTCAGGTTTTTGTTGTTGGATCGGGTGCACTGGGCTGTGAGTTTTTGAAGAATTTAGCTCTAATGGGAGTTTCATGCAACAGCCAAGGAAAGCTAACAGTCACTGATGATGACGTAATCGAGAAAAGCAATCTCAGCCGTCAATTTCTGTTTCGCGATTGGAACATCGGCCAGGCTAAATCCACCGTTGCTGCTGCTGCTGCTGCAACTATAAATCCTTCACTTTGCATTGAAGCGCTGCAGAATCGTGTGGGCCCTGAGACTGAGAACGTGTTTCACGATACTTTCTGGGAGAATCTTAGCGTTGTGATTAATGCTCTGGACAACATCAATGCCCGTTTGTACGTTGATCAGAGATGCTTGTATTTCCAGAAGCCGCTTCTAGAGTCTGGAACATTAGGTGCCAAGTGCAACACTCAGATGGTCATTCCTCATCTGACAGAAAACTACGGTGCCTCTAGGGACCCACCAGAGAAACAAGCCCCCATGTGCACAGTGCATTCATTCCCCCACAACATTGATCACTGCCTAACGTGGGCCCGGTCCGAGTTTGAGGGATTGCTTGAGAAAACACCCGCTGAAGCCAATGCCTATCTTTCCAATCCGGCTGAATACACATCAGCAATGATCAACGCTGGTGATGCCCAGGCCAGGGATAATTTAGAACGAGTTCTCGAGTGCCTTGATAAGGACAGATGTGAAACATTCCAAGACTGCATCACTTGGGCTCGCCTAAAGTTTGAAGATTATTTTTCTAATCGTGTGAAGCAGTTGATTTTTACTTTCCCTGAAGATGCTGCAACAAGTACTGGGGCTCCATTTTGGTCGGCTCCCAAGCGCTTCCCCCAACCACTAAATTTCTCTTCTGCTGATCTGAGCCACCTCCATTTTATTATGTCTGCATCCATTTTGCGTGCTGAGACATTTGGCATCCCAATCCCTGATTGGGCTAAGAACCCTAAGAAGTTGTCGAGGCTGTTGATAAATGCTTCTATAGATGACAGTGCAGTTATCAATGAACTAATCATGAAATTAGAGCAGTGTCGGAAGGTTTTGCCACCTGGGTACAAGATGAAACCAATTCAGTTTGAGAAGGACGATGACACAAATTACCACATGGACCTGATAGCGGCACTTGCTAACATGAGGGCAAGGAATTACAGAATTCGAAGTTGA

Network for GWHGAAZE031095

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16190.6	E1_FCCH	73	144	1.10E-24
PF16191.6	E1_4HB	145	214	2.10E-23
PF00899.22	ThiF	296	524	1.40E-60
PF10585.10	UBA_e1_thiolCys	483	703	4.10E-68

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ThiF

KEGG pathway

KO	Enzyme	pathway	mapID
K03178	UBE1, UBA1	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name
GO:0006464	biological_process	cellular protein modification process
GO:0008641	molecular_function	ubiquitin-like modifier activating enzyme activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.513
	SRR3591706	second leaf	38.137
	SRR3591707	mature leaf	48.025
	SRR3591708	Shoot apex	30.566
	SRR3591709	Stem	64.757
	SRR3591710	White floral bud	65.629
	SRR3591711	White flower	95.055
	SRR3591712	Green floral bud	42.771
	SRR3591713	Yellow flower	56.931
SRP173429	SRR8316895	Juvenile bud stage	26.966
	SRR8316896	Juvenile bud stage	40.239
	SRR8316897	Juvenile bud stage	20.373
	SRR8316894	Third green stage	15.852
	SRR8316900	Third green stage	43.505
	SRR8316901	Third green stage	43.048
	SRR8316898	Complete white stage	23.671
	SRR8316899	Complete white stage	58.924
	SRR8316903	Complete white stage	56.694
	SRR8316902	Silver flowering stage	33.188
	SRR8316904	Silver flowering stage	43.026
	SRR8316905	Silver flowering stage	18.137
	SRR8316906	Gold flowering stage	71.580
	SRR8316907	Gold flowering stage	66.631
	SRR8316908	Gold flowering stage	77.741
SRP132670	SRR6706286	Control	69.012
	SRR6706287	Light intensity 50%	62.837
	SRR6706288	Light intensity 20%	62.508
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.842
	CNS0095593	Slightly white alabastrum(diploid) 2	22.586
	CNS0095594	Slightly white alabastrum(diploid) 3	20.821
	CNS0095595	Whole white alabastrum(diploid) 2	23.305
	CNS0095596	Whole white alabastrum(diploid) 3	13.535
	CNS0095597	Whole white alabastrum(diploid) 4	17.382
	CNS0095598	Silvery flower (diploied) 1	38.419
	CNS0095599	Silvery flower (diploied) 2	36.800
	CNS0095600	Silvery flower (diploied) 3	99.585
	CNS0095601	Golden flower (diploid) 1	31.219
	CNS0095602	Golden flower (diploid) 2	94.676
	CNS0095603	Golden flower (diploid) 3	87.476
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.744
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.383
	CNS0095606	Slightly white alabastrum(tetraploid) 3	76.381
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.359
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.723
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.755
	CNS0095610	Silvery flower (tetraploid) 1	107.546
	CNS0095611	Silvery flower (tetraploid) 2	101.707
	CNS0095612	Silvery flower (tetraploid) 3	65.715
	CNS0095613	Golden flower (tetraploid) 1	35.873
	CNS0095614	Golden flower (tetraploid) 2	79.156
	CNS0095615	Golden flower (tetraploid) 3	61.197
CRA001975	CRR073297	Stem 1	58.539
	CRR073298	Stem 2	54.588
	CRR073299	Stem 3	62.688
	CRR073300	Leaf 1	74.158
	CRR073301	Leaf 2	74.920
	CRR073302	Leaf 3	63.091
	CRR073303	Juvenile bud 1	90.754
	CRR073304	Juvenile bud 2	84.062
	CRR073305	Juvenile bud 3	131.335
	CRR073306	Third green 1	108.243
	CRR073307	Third green 2	85.709
	CRR073308	Third green 3	119.848
	CRR073309	Second white 1	158.609
	CRR073310	Second white 2	111.733
	CRR073311	Second white 3	128.683
	CRR073312	Silver flowering 1	115.251
	CRR073313	Silver flowering 2	136.576
	CRR073314	Silver flowering 3	113.474
	CRR073315	Gold flowering 1	49.235
	CRR073316	Gold flowering 2	79.908
	CRR073317	Gold flowering 3	74.585
	CRR073318	Tawny withering 1	63.843
	CRR073319	Tawny withering 2	51.437
	CRR073320	Tawny withering 3	60.756