Detail information of GWHGAAZE031096


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009802174.12.37486E-37PREDICTED: ubiquitin-activating enzyme E1 1 isoform X1 [Nicotiana sylvestris]
Swissprottr|P93028|UBE11_ARATH2E-21Ubiquitin-activating enzyme E1 1
trEMBLtr|F6GUM1|F6GUM1_VITVI8E-31Putative uncharacterized protein {ECO:0000313|EMBL:CCB43454.1}
TAIR10AT2G30110.16E-20ubiquitin-activating enzyme 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5307710453079220-
GWHAAZE00000009mRNA5307710453079220-
GWHAAZE00000009exon5307710453077159-
GWHAAZE00000009exon5307726553077659-
GWHAAZE00000009exon5307773353077817-
GWHAAZE00000009exon5307905253079220-
GWHAAZE00000009CDS5307905253079220-
GWHAAZE00000009CDS5307773353077817-
GWHAAZE00000009CDS5307726553077659-
GWHAAZE00000009CDS5307710453077159-
Transcript Sequence

Network for GWHGAAZE031096

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03178UBE1, UBA1 Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName
GO:0008641molecular_functionubiquitin-like modifier activating enzyme activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf31.973
SRR3591706second leaf16.481
SRR3591707mature leaf15.916
SRR3591708Shoot apex9.448
SRR3591709Stem29.612
SRR3591710White floral bud31.959
SRR3591711White flower42.007
SRR3591712Green floral bud13.337
SRR3591713Yellow flower22.911
SRP173429 SRR8316895Juvenile bud stage 15.473
SRR8316896Juvenile bud stage 20.177
SRR8316897Juvenile bud stage 4.627
SRR8316894Third green stage 9.124
SRR8316900Third green stage 23.462
SRR8316901Third green stage 28.215
SRR8316898Complete white stage 12.628
SRR8316899Complete white stage 34.964
SRR8316903Complete white stage 36.930
SRR8316902Silver flowering stage21.002
SRR8316904Silver flowering stage28.840
SRR8316905Silver flowering stage12.958
SRR8316906Gold flowering stage 48.745
SRR8316907Gold flowering stage 44.715
SRR8316908Gold flowering stage 38.722
SRP132670SRR6706286Control63.737
SRR6706287Light intensity 50%59.833
SRR6706288Light intensity 20%55.852
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.915
CNS0095593Slightly white alabastrum(diploid) 28.362
CNS0095594Slightly white alabastrum(diploid) 39.756
CNS0095595Whole white alabastrum(diploid) 211.328
CNS0095596Whole white alabastrum(diploid) 37.557
CNS0095597Whole white alabastrum(diploid) 48.982
CNS0095598Silvery flower (diploied) 118.835
CNS0095599Silvery flower (diploied) 221.137
CNS0095600Silvery flower (diploied) 364.693
CNS0095601Golden flower (diploid) 113.387
CNS0095602Golden flower (diploid) 258.153
CNS0095603Golden flower (diploid) 361.449
CNS0095604Slightly white alabastrum(tetraploid) 17.132
CNS0095605Slightly white alabastrum(tetraploid) 25.850
CNS0095606Slightly white alabastrum(tetraploid) 332.014
CNS0095607Whole white alabastrum(tetraploid) 15.932
CNS0095608Whole white alabastrum(tetraploid) 24.386
CNS0095609Whole white alabastrum(tetraploid) 322.052
CNS0095610Silvery flower (tetraploid) 153.313
CNS0095611Silvery flower (tetraploid) 244.072
CNS0095612Silvery flower (tetraploid) 327.830
CNS0095613Golden flower (tetraploid) 113.638
CNS0095614Golden flower (tetraploid) 234.278
CNS0095615Golden flower (tetraploid) 325.966
CRA001975CRR073297Stem 122.962
CRR073298Stem 222.260
CRR073299Stem 324.217
CRR073300Leaf 135.864
CRR073301Leaf 226.064
CRR073302Leaf 323.959
CRR073303Juvenile bud 127.040
CRR073304Juvenile bud 233.243
CRR073305Juvenile bud 350.631
CRR073306Third green 148.265
CRR073307Third green 237.650
CRR073308Third green 354.726
CRR073309Second white 158.901
CRR073310Second white 244.841
CRR073311Second white 355.238
CRR073312Silver flowering 141.352
CRR073313Silver flowering 259.968
CRR073314Silver flowering 340.528
CRR073315Gold flowering 114.472
CRR073316Gold flowering 223.369
CRR073317Gold flowering 327.917
CRR073318Tawny withering 116.454
CRR073319Tawny withering 28.753
CRR073320Tawny withering 311.935