Gene detail

Detail information of GWHGAAZE031101

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009607327.1	PREDICTED: exportin-T isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q7PC79\|XPOT_ARATH	Exportin-T
trEMBL	tr\|M1C3G3\|M1C3G3_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400058889}
TAIR10	AT1G72560.3	ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	53227603	53232609	+
GWHAAZE00000009	mRNA	53227603	53232609	+
GWHAAZE00000009	exon	53227603	53227956	+
GWHAAZE00000009	exon	53228094	53229326	+
GWHAAZE00000009	exon	53229643	53229732	+
GWHAAZE00000009	exon	53230086	53230190	+
GWHAAZE00000009	exon	53230588	53230647	+
GWHAAZE00000009	exon	53230969	53231031	+
GWHAAZE00000009	exon	53231107	53231202	+
GWHAAZE00000009	exon	53231575	53231739	+
GWHAAZE00000009	exon	53232038	53232211	+
GWHAAZE00000009	exon	53232345	53232410	+
GWHAAZE00000009	exon	53232481	53232609	+
GWHAAZE00000009	CDS	53227603	53227956	+
GWHAAZE00000009	CDS	53228094	53229326	+
GWHAAZE00000009	CDS	53229643	53229732	+
GWHAAZE00000009	CDS	53230086	53230190	+
GWHAAZE00000009	CDS	53230588	53230647	+
GWHAAZE00000009	CDS	53230969	53231031	+
GWHAAZE00000009	CDS	53231107	53231202	+
GWHAAZE00000009	CDS	53231575	53231739	+
GWHAAZE00000009	CDS	53232038	53232211	+
GWHAAZE00000009	CDS	53232345	53232410	+
GWHAAZE00000009	CDS	53232481	53232609	+

Transcript Sequence
>GWHTAAZE031135 ATGGACGATCTCGAAAAGGCAATACTCATCACATTCGATGAAACGGGGGCTGTCGATTCCGTACTCAAATCGCAGGCAGTTGCATTCTGTCAACGGATCAAGGAAACTCCATCAATTTGTAGTATATGTATTGAACGACTCTGGTTTTCTAAACTCGTTCAAGTCCAGTTTTGGTGCTTACAGTGTCTTCACGAAGTTATTCGTCTTCGTTATTCATCCCTCAGTCCTCAAGAGAAGTCTTTTATAAGAAAATCTGTCTTTTCTATGGCCTGTTATGAGGGTCTTGATGATAATAATCCTGTTAGGGTTTTGGAGGCTCCTGCATTTATCAAGAACAAGCTTGCTCAAGTCTTGCTTGGACTACCCTCGAGTACGGAAGAAGTGGCTATTGCTGCCCAAGTTAAGGATGCAATGAGGGAGCAATGTGTAGTTCAGATGGTTAGAGCATGGTATGATATAGTCTCGATGTACAGAAATTCTGACCCGGAACTATGTTCTACTGTGTTAGATTCTATGAGGAGATATATTTCTTGGATTGACATTGGTTTAATTGTGAATGATGCATTTATCCGGTTATTATTTGAACTGATGTTGGGCGATGGATTTTCGGATCAACTGAGAGGTGCTGCTGCCAGTTGTGTTCTTGCTGTAGTGTCTAAGAGGATGGAATCGCGATCAAAGCTTACCCTTTTGCAGAGCCTACAGATGAGTAGGGTTTTTGGTTTAATAGCCGAGGATAATGACTCTGAGTTGGTCTCGAAAGCAGCAGCGTTACTTACTGGATATGCTACTGAGCTTCTAGATTGCTCCAAGCGCATAAATGCTGAGGATGCAAAGGAGGTGTCAATGGAGCTACTGAATGAGGTTTTGCCTTCGATATTTTGTGTAATGCAGAACCATGAGGTTGACACGGCATTCAGCATTGTGCAATTTCTTTCGGAGTTTGTCTCCACAATGAAGAGCCTTCCTTCTTTGAGCGAGAGGCAACTTCTTCACGTTGGTCAGATATTAGAAGTGATACGTATGCAGATTCGGTTTGATCCTAGTTACCGTGATAATCTCGATGTGTTGGATAAAATTGGGAGGGAAGAGGAAGATGGGATGGTGGAATTTCGGAAAGATTTATTAGTCTTGCTTCGTAGTGTAGGTCGTGTGGCACCTGATGTCACTCTGAATTTTATAAGAAACTCATTTGCTAGTGCTGTTTCATCTTCTGTCGAAAGGAATGTGGAAGAGGTAGAAGCTGCACTTTCCCTCTTTTATGCACTCGGAGAGTCATTGAGCGACGAGACGATGAGAAGTGGTAGCGGTCTTTTGAGAGAATTGGTGCCAATGCTCTTATCGACAAGGTTTCCTTGCCATTCTAATAGGCTTGTTGCACTCGTGTACTTGGATACAATAACTAGATACATGAAGTTTATTCAGGAGAATACCCAGTACATACCTTTGGTTCTAGCTGCCTTTCTCGATGAGAGAGGTATACACCATCCAAACGTGAATGTGAGTCGAAGAGCAAGCTATCTTTTCATGAGGGTTGTGAAAATGCTCAAATCAAAGCTTGTGCCTTTCATAGAGACAATTTTGCAGGCAATTGGCTTGTTAATTGGGATGGAAGATGTACCTCTGGAAAAGCAATCTGATTACCTTTCCTCGCTGCTTACTCCTCTTTGTCAGCAGGTTGAAGTGTTGCTTGTTAATGCCAAAGTTCAGAACCCAGAAGAGTCTCCCGCAGGGATTGCTAATATGCAGCAAATAATCATGGCCATTAATGCCATCAGCAAGGGCTTCAGTGAGCGTCTTGTAACTGCCAGTCGCCCTGCAATTGGTCTCATGTTCAAGCAGACATTGGATGTTCTCCTACAAATCCTTGTTGTCTTTCCAAAAATAGAGCCCTTGCGGTCTAAGGTCACATCATTTATTCATCGGATGGTGGACACGTTGGGAGCATCCGTATTTCCTTACCTCCCCAAAGCCATTGAGCAACTGCTTGCTGAAAGTGAGCCTAAGGAGCTGATGGGTTTTCTCTTATTACTTAATCAGCTTATCTGCAAATTCAACGTTGCAGTACGAGACATAATGGAGGAAGTATACCCTGTTATTGCAAATAAGATATTTAATATTATTCCAAGGGACCCATTTCCTTCAGGACCTGGTAACAATACAGAGGAAATCCGTGAATTACAAGAGCTTCAGCGGACCTTTTACACATTTCTTAATGTGATAGCAACCCATGATCTGTCTGTAGTTTTTCTTTCTCCCAAGAGTAGGCCCTACTTGGAGGTGATGATGCAGTTGTTACTGTCTACATCATGCAATCACAAGGAGATCCTTGTTAGAAAGGCATGTGTCCAAATATTTATTAGACTAATTAAAGATTGGAGCGCCAGGCCTTTTGGCGAAGAAAAGGTGCCTGGTTTTCAAAGTTTTGTGATAGAGGCTTTTGCGATGAACTGTTGCTTGTACAGTGTGCTTGACAAGTCGTTTGAGTTTCATGATGCAAATACAGTAAGGCCACATTCACCTGAGTATGATTGA

Network for GWHGAAZE031101

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08389.13	Xpo1	122	213	3.50E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14288	XPOT	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.670
	SRR3591706	second leaf	3.263
	SRR3591707	mature leaf	3.052
	SRR3591708	Shoot apex	5.669
	SRR3591709	Stem	4.735
	SRR3591710	White floral bud	3.525
	SRR3591711	White flower	5.831
	SRR3591712	Green floral bud	5.597
	SRR3591713	Yellow flower	3.754
SRP173429	SRR8316895	Juvenile bud stage	4.630
	SRR8316896	Juvenile bud stage	4.964
	SRR8316897	Juvenile bud stage	2.442
	SRR8316894	Third green stage	2.590
	SRR8316900	Third green stage	4.632
	SRR8316901	Third green stage	5.468
	SRR8316898	Complete white stage	1.074
	SRR8316899	Complete white stage	6.623
	SRR8316903	Complete white stage	2.382
	SRR8316902	Silver flowering stage	1.697
	SRR8316904	Silver flowering stage	2.322
	SRR8316905	Silver flowering stage	0.979
	SRR8316906	Gold flowering stage	3.673
	SRR8316907	Gold flowering stage	2.721
	SRR8316908	Gold flowering stage	3.301
SRP132670	SRR6706286	Control	3.648
	SRR6706287	Light intensity 50%	3.825
	SRR6706288	Light intensity 20%	4.237
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.864
	CNS0095593	Slightly white alabastrum(diploid) 2	1.601
	CNS0095594	Slightly white alabastrum(diploid) 3	2.382
	CNS0095595	Whole white alabastrum(diploid) 2	2.205
	CNS0095596	Whole white alabastrum(diploid) 3	1.876
	CNS0095597	Whole white alabastrum(diploid) 4	2.303
	CNS0095598	Silvery flower (diploied) 1	2.793
	CNS0095599	Silvery flower (diploied) 2	2.393
	CNS0095600	Silvery flower (diploied) 3	3.631
	CNS0095601	Golden flower (diploid) 1	2.274
	CNS0095602	Golden flower (diploid) 2	3.825
	CNS0095603	Golden flower (diploid) 3	2.801
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.902
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.910
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.139
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.776
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.725
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.239
	CNS0095610	Silvery flower (tetraploid) 1	3.622
	CNS0095611	Silvery flower (tetraploid) 2	4.801
	CNS0095612	Silvery flower (tetraploid) 3	1.759
	CNS0095613	Golden flower (tetraploid) 1	1.134
	CNS0095614	Golden flower (tetraploid) 2	2.588
	CNS0095615	Golden flower (tetraploid) 3	1.911
CRA001975	CRR073297	Stem 1	4.060
	CRR073298	Stem 2	3.323
	CRR073299	Stem 3	2.282
	CRR073300	Leaf 1	4.440
	CRR073301	Leaf 2	3.661
	CRR073302	Leaf 3	2.935
	CRR073303	Juvenile bud 1	2.859
	CRR073304	Juvenile bud 2	1.262
	CRR073305	Juvenile bud 3	2.978
	CRR073306	Third green 1	0.151
	CRR073307	Third green 2	0.198
	CRR073308	Third green 3	0.336
	CRR073309	Second white 1	1.022
	CRR073310	Second white 2	0.388
	CRR073311	Second white 3	0.807
	CRR073312	Silver flowering 1	0.750
	CRR073313	Silver flowering 2	0.661
	CRR073314	Silver flowering 3	0.534
	CRR073315	Gold flowering 1	0.866
	CRR073316	Gold flowering 2	1.627
	CRR073317	Gold flowering 3	0.744
	CRR073318	Tawny withering 1	3.282
	CRR073319	Tawny withering 2	2.509
	CRR073320	Tawny withering 3	3.683