Detail information of GWHGAAZE031105


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAAP83138.10lipoxygenase [Nicotiana attenuata]
Swissprottr|O24371|LOX31_SOLTU0Linoleate 13S-lipoxygenase 3-1, chloroplastic (Precursor)
trEMBLtr|Q6X5R5|Q6X5R5_NICAT0Lipoxygenase {ECO:0000256|RuleBase:RU003975}
TAIR10AT1G72520.10PLAT/LH2 domain-containing lipoxygenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5328732553291974-
GWHAAZE00000009mRNA5328732553291974-
GWHAAZE00000009exon5328732553288081-
GWHAAZE00000009exon5328830653288569-
GWHAAZE00000009exon5328865553288956-
GWHAAZE00000009exon5328911153289304-
GWHAAZE00000009exon5328942853289766-
GWHAAZE00000009exon5328985653290093-
GWHAAZE00000009exon5329105353291333-
GWHAAZE00000009exon5329162353291974-
GWHAAZE00000009CDS5329162353291974-
GWHAAZE00000009CDS5329105353291333-
GWHAAZE00000009CDS5328985653290093-
GWHAAZE00000009CDS5328942853289766-
GWHAAZE00000009CDS5328911153289304-
GWHAAZE00000009CDS5328865553288956-
GWHAAZE00000009CDS5328830653288569-
GWHAAZE00000009CDS5328732553288081-
Transcript Sequence

Network for GWHGAAZE031105

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01477.24PLAT1232081.60E-11
PF00305.20Lipoxygenase2218910
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00454LOX2S Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Linoleic acid metabolismmap00591
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0005515molecular_functionprotein binding
GO:0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872molecular_functionmetal ion binding
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf115.835
SRR3591706second leaf77.033
SRR3591707mature leaf99.627
SRR3591708Shoot apex35.912
SRR3591709Stem102.381
SRR3591710White floral bud297.100
SRR3591711White flower368.836
SRR3591712Green floral bud58.689
SRR3591713Yellow flower311.269
SRP173429 SRR8316895Juvenile bud stage 210.376
SRR8316896Juvenile bud stage 104.750
SRR8316897Juvenile bud stage 161.120
SRR8316894Third green stage 22.208
SRR8316900Third green stage 58.653
SRR8316901Third green stage 89.811
SRR8316898Complete white stage 57.313
SRR8316899Complete white stage 218.848
SRR8316903Complete white stage 86.100
SRR8316902Silver flowering stage129.085
SRR8316904Silver flowering stage209.259
SRR8316905Silver flowering stage108.474
SRR8316906Gold flowering stage 381.871
SRR8316907Gold flowering stage 298.347
SRR8316908Gold flowering stage 438.420
SRP132670SRR6706286Control64.532
SRR6706287Light intensity 50%74.460
SRR6706288Light intensity 20%66.608
CNP0000432CNS0095592Slightly white alabastrum(diploid) 191.315
CNS0095593Slightly white alabastrum(diploid) 2108.644
CNS0095594Slightly white alabastrum(diploid) 3119.046
CNS0095595Whole white alabastrum(diploid) 2105.951
CNS0095596Whole white alabastrum(diploid) 317.199
CNS0095597Whole white alabastrum(diploid) 472.996
CNS0095598Silvery flower (diploied) 1250.514
CNS0095599Silvery flower (diploied) 2304.644
CNS0095600Silvery flower (diploied) 3365.093
CNS0095601Golden flower (diploid) 1319.009
CNS0095602Golden flower (diploid) 2436.490
CNS0095603Golden flower (diploid) 3430.398
CNS0095604Slightly white alabastrum(tetraploid) 115.954
CNS0095605Slightly white alabastrum(tetraploid) 29.364
CNS0095606Slightly white alabastrum(tetraploid) 344.799
CNS0095607Whole white alabastrum(tetraploid) 18.578
CNS0095608Whole white alabastrum(tetraploid) 26.878
CNS0095609Whole white alabastrum(tetraploid) 330.348
CNS0095610Silvery flower (tetraploid) 1296.945
CNS0095611Silvery flower (tetraploid) 2393.373
CNS0095612Silvery flower (tetraploid) 3756.906
CNS0095613Golden flower (tetraploid) 1260.522
CNS0095614Golden flower (tetraploid) 2217.926
CNS0095615Golden flower (tetraploid) 3769.584
CRA001975CRR073297Stem 183.869
CRR073298Stem 279.991
CRR073299Stem 377.411
CRR073300Leaf 1100.474
CRR073301Leaf 2119.557
CRR073302Leaf 372.277
CRR073303Juvenile bud 190.279
CRR073304Juvenile bud 272.063
CRR073305Juvenile bud 3167.275
CRR073306Third green 1458.855
CRR073307Third green 2238.498
CRR073308Third green 3360.715
CRR073309Second white 1489.970
CRR073310Second white 2426.672
CRR073311Second white 3453.002
CRR073312Silver flowering 1711.676
CRR073313Silver flowering 2761.006
CRR073314Silver flowering 3586.612
CRR073315Gold flowering 135.843
CRR073316Gold flowering 2125.610
CRR073317Gold flowering 3139.378
CRR073318Tawny withering 192.944
CRR073319Tawny withering 2559.638
CRR073320Tawny withering 3116.030