Gene detail

Detail information of GWHGAAZE031116

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010654407.1	PREDICTED: nuclear pore complex protein NUP107 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q8L748\|NU107_ARATH	Nuclear pore complex protein NUP107 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|A0A067L851\|A0A067L851_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP40670.1}
TAIR10	AT3G14120.2	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	53502707	53525932	+
GWHAAZE00000009	mRNA	53502707	53525932	+
GWHAAZE00000009	exon	53502707	53502796	+
GWHAAZE00000009	exon	53506494	53506588	+
GWHAAZE00000009	exon	53508060	53508406	+
GWHAAZE00000009	exon	53509022	53509091	+
GWHAAZE00000009	exon	53509418	53509504	+
GWHAAZE00000009	exon	53514000	53514072	+
GWHAAZE00000009	exon	53514821	53514946	+
GWHAAZE00000009	exon	53516034	53516192	+
GWHAAZE00000009	exon	53516872	53516964	+
GWHAAZE00000009	exon	53517136	53517303	+
GWHAAZE00000009	exon	53517920	53518018	+
GWHAAZE00000009	exon	53518945	53519180	+
GWHAAZE00000009	exon	53519259	53519316	+
GWHAAZE00000009	exon	53520152	53520240	+
GWHAAZE00000009	exon	53520591	53520722	+
GWHAAZE00000009	exon	53521363	53521485	+
GWHAAZE00000009	exon	53522426	53522524	+
GWHAAZE00000009	exon	53522642	53522830	+
GWHAAZE00000009	exon	53523415	53523589	+
GWHAAZE00000009	exon	53523803	53523866	+
GWHAAZE00000009	exon	53524026	53524228	+
GWHAAZE00000009	exon	53524330	53524471	+
GWHAAZE00000009	exon	53524717	53524877	+
GWHAAZE00000009	exon	53525033	53525149	+
GWHAAZE00000009	exon	53525876	53525932	+
GWHAAZE00000009	CDS	53502707	53502796	+
GWHAAZE00000009	CDS	53506494	53506588	+
GWHAAZE00000009	CDS	53508060	53508406	+
GWHAAZE00000009	CDS	53509022	53509091	+
GWHAAZE00000009	CDS	53509418	53509504	+
GWHAAZE00000009	CDS	53514000	53514072	+
GWHAAZE00000009	CDS	53514821	53514946	+
GWHAAZE00000009	CDS	53516034	53516192	+
GWHAAZE00000009	CDS	53516872	53516964	+
GWHAAZE00000009	CDS	53517136	53517303	+
GWHAAZE00000009	CDS	53517920	53518018	+
GWHAAZE00000009	CDS	53518945	53519180	+
GWHAAZE00000009	CDS	53519259	53519316	+
GWHAAZE00000009	CDS	53520152	53520240	+
GWHAAZE00000009	CDS	53520591	53520722	+
GWHAAZE00000009	CDS	53521363	53521485	+
GWHAAZE00000009	CDS	53522426	53522524	+
GWHAAZE00000009	CDS	53522642	53522830	+
GWHAAZE00000009	CDS	53523415	53523589	+
GWHAAZE00000009	CDS	53523803	53523866	+
GWHAAZE00000009	CDS	53524026	53524228	+
GWHAAZE00000009	CDS	53524330	53524471	+
GWHAAZE00000009	CDS	53524717	53524877	+
GWHAAZE00000009	CDS	53525033	53525149	+
GWHAAZE00000009	CDS	53525876	53525932	+

Transcript Sequence
>GWHTAAZE031150 ATGCTTGTTGAAGCAACAGGGAATGGTCGCCGTAGCGGTGCAGGCACTCATACAGTGGAAGCGTTTGCCCGCATTGACCATGCCGCTTTGGACCAAGCAGCAATAATGGAGGTAGATATGGAGACTTCTCCTAGCTATTTTGACCCCGAAGATCTCAGTAGCAGAGCGCGTTTTCGTCGATACGGAAAAAGGCATTCAACTTCAAGTATATCACCCCACCAAGAAAATTCAGCTTCAAAGTTCAGTGAAATCAGATCAAATGCTGCACTTTTTCTTGAAAATATCAAACAAGAGGTTGAGAATTTTGATGCAGATTACTTGGAAGGATCACCTGCAAAGTCACAATCTGTTTTCAAGAGGAGGCCATCCATTGATATCCGTGGAATTTCCGAGGTGGATGTTGCATCTGATTCCACAAATAGAGCTGGAGTTCATTCCATAAAAGCTTTCAAACTCGAGGATGATGTGTTGGTTGACAGTGGAGACACAACCTTTACTCTATTTGCTTCTTTACTTGATTCTGCTATTCAAGGGTTGATGCCCATCCCTGATTTGATACTACAACTGGAGAGAGCTTGCCGCAATGTTTCTGAGTCAATTAGGTATGGCAGCAACGAAAGACATAGGATTGTCGAGGACAAACTGATGAGGCAAAAGGCTCGGAGCTTACTTGATGAGGCTGCTTCCTGGGTGGTTCTAGGAATGGTCATCTTGTCCCATACTCATCCCCATCCCCTGGCTATTCCTAGTGGCCGATTGGGGTCTCCGCCAACTTCACATTTGGAGGCTTGTCAATTTGTTGCAGCTGATCATACAGCCCAATTATGCCTTCGAATAGTTCAGTGGCTGGAAGAGTTAGCCTCCAAAGCCCTTGATTTGGATAACAAGATGCGAGGATCTCACATCGGCACTTATCTCCCTAGCTCTGGAGTTTGGCAACATACTCAACGGTTTCTAAAGAAAGGTGCCCCAAATTCAAATACGGTTCATCACTTGGATTTTGATGCTCCAACGCGTGAACATGCTCAACAGCTATATGATGACAAAAAACAAGATGAATCTCTCCTGGAAGATGTCTGGATGTTATTAAGAGCTGGAAGAATAGATGAGGCATGCAATCTTTGCCGCTCTGCTGGACAGCCTTGGAGAGCTGCAACTCTGAGCCCATTTGGAGGGCTAGATCAATTTCCTTCCGTTCAGGCGCTGGTAAAAAATGGCAAGAGCAGAACCCTGCAAGCCATTGAACTGGAAAGTGGCATTGGTCATCAATGGCGTCTTTGGAAATGGGCTTCCTATTGTGCATCAGAGAGAATTGCAGAGCAAGATGGTGGAAAATATGAAACAGCGGTATATGCATCCCAATGTAGTAATTTGAAGCGCATCCTCCCAATTTGTACAGACTGGGAGTCTGCATGCTGGGCTATGGCCAAATCGTGGCTTGATGTTCAGGTAGATATGGAATTAGCTCGATTGCAACCAGGTGGAATGGATCAGTTTAAGAGCTATGAAGATGCAATTGAGAGAAGTCCTGTACAAAGCGATGGTGTTTCTCAGCCAATAGCTGGACCTGAAAATTGGCCACTCCAAGTTCTGAACCAGCAACCTAGAGACCTTTCTGCTCTTCTTCAGAAACTCTATTCAAGTGACACAGTACATGAAGCTGTTACTCGAGGATGCAAGGAGCAACAGAGGCAAATAGAGATGAGTCTTATGTTAGGGGATATACCACGTCTTCTGGACCTTATATGGTCATGGGTATCACCTTCAGAAGATGATCAGAACGTCTTCAGGCCTCATGGCGATCCTCAGATGATTCGTTTTGGCGCCCATTTAGTTCTTGTGCTTAGATATTTACTCGCAGATCAAATGAAGGATGCTTTTAAAGAGAAGTTAATGACTCTTGGTGACCTCATTCTTCACATGTATGCAATGTTTCTATTCTCAAAACAACATGAAGGGTTGGTTGGAATTTATGCTTCCCAGCTTGCACGCCATCGCTGCATCGATCTTTTTGTGCATATGATGGAGTTAAGGCTGAATAGCAGTGTGCATGTGAGATACAAAATTTTCCTTTCTGCTATAGAGTATTTGCCATTCTCTCCTGGAGATGATTTAAAAGGCAGTTTTGAAGAAATCATTGAGAGAGTTCTGTCAAGATCACGAGAAACTAAAGTTGGAAAATATGACAAGTCATCTGATGTTGTTGAGCAGTACCGGTTGCAGTCCCTTCAAAAAGCTATGGTCATTCAGTGGCTCTGCTTTACACCCCCTTCCACAATTAATGATGCTAAGACTGTTAGAGCCAAGCTCCTCCTCCGAGCATTGATGCAGAGCAACATACTTTTCAGGGAGTTTTCTCTTATATCTATGTGGAGGGTACCAGCCATGCCCATCGGAGCGCACACTTTGCTTAGTTTACTTGCTGAGCCCATGAAGCAGGCTACTGATATTCTTCTTTCCACAGAGGATCATGATGTTTCTGAGAATTTGAGAGAGTTTGAGGACTGGGAAAAACAAAGAGCGGAGGTAGCAGCCAGAGAAACATTAAATTCGTCATTACTCCTCCTGCTAAGAAAAGATAATCCTTGGTTGGTTCCTACTGAAGATCGTATTTACGAATCAATGGAGTATGTATTCCTTGAATTGCATGCCACTGCAATGCTGTGTCTGCCTTCTGGTGAATGTATGCCTCCTGATGCCACCCTGTGCACAACATTAACGAGTGCCCTTTACTCTTCAGTGAGCGAGGAAGTAGTGCTCAATCGCCAATTAACGGTGAAGGTCTCTATCTCAACAGCAGACAGTTACTGCATCGAAGTTGTTCTTCGTTGCTTGGCAACAGAGGGTGATGGACTTGGGCCACATGAACTCAATGATGGTGGTATCCTTGCTACTGTGATTGCAGCTGCCTTCAAAGGTGAGCTTGCCAGATTTCAAACTGGAGTGACAATGGAGATCTCCCGGTTAGATGCTTGGTATTCTGGTACTGATGGTTCACTAGAAGGTCCTGCGACATACATTGTGCAGGGCCTTTGCCGTAGGTGTTGCGTTCCAGAAGTCATTCTTAGGTGTATGCAGGTTTCTGTTTCACTCATGGAGTCCGGCAATCCACCGGAAAGCCATGATGAGTTGGTTGAACTAGTTGCATGCTCTGAAACTGGATTTCTCCATTTGTTTAGTCAGCATCAATTGCAGAGTATGAAGATCTGTTGGCTGGAAGCTGAAGTCGTAGGTTCTGATGCTGCTCATTGA

Network for GWHGAAZE031116

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04121.14	Nup84_Nup100	265	785	7.60E-57

Protein Sequence

>GWHPAAZE031134
MLVEATGNGRRSGAGTHTVEAFARIDHAALDQAAIMEVDMETSPSYFDPEDLSSRARFRRYGKRHSTSSISPHQENSASKFSEIRSNAALFLENIKQEVENFDADYLEGSPAKSQSVFKRRPSIDIRGISEVDVASDSTNRAGVHSIKAFKLEDDVLVDSGDTTFTLFASLLDSAIQGLMPIPDLILQLERACRNVSESIRYGSNERHRIVEDKLMRQKARSLLDEAASWVVLGMVILSHTHPHPLAIPSGRLGSPPTSHLEACQFVAADHTAQLCLRIVQWLEELASKALDLDNKMRGSHIGTYLPSSGVWQHTQRFLKKGAPNSNTVHHLDFDAPTREHAQQLYDDKKQDESLLEDVWMLLRAGRIDEACNLCRSAGQPWRAATLSPFGGLDQFPSVQALVKNGKSRTLQAIELESGIGHQWRLWKWASYCASERIAEQDGGKYETAVYASQCSNLKRILPICTDWESACWAMAKSWLDVQVDMELARLQPGGMDQFKSYEDAIERSPVQSDGVSQPIAGPENWPLQVLNQQPRDLSALLQKLYSSDTVHEAVTRGCKEQQRQIEMSLMLGDIPRLLDLIWSWVSPSEDDQNVFRPHGDPQMIRFGAHLVLVLRYLLADQMKDAFKEKLMTLGDLILHMYAMFLFSKQHEGLVGIYASQLARHRCIDLFVHMMELRLNSSVHVRYKIFLSAIEYLPFSPGDDLKGSFEEIIERVLSRSRETKVGKYDKSSDVVEQYRLQSLQKAMVIQWLCFTPPSTINDAKTVRAKLLLRALMQSNILFREFSLISMWRVPAMPIGAHTLLSLLAEPMKQATDILLSTEDHDVSENLREFEDWEKQRAEVAARETLNSSLLLLLRKDNPWLVPTEDRIYESMEYVFLELHATAMLCLPSGECMPPDATLCTTLTSALYSSVSEEVVLNRQLTVKVSISTADSYCIEVVLRCLATEGDGLGPHELNDGGILATVIAAAFKGELARFQTGVTMEISRLDAWYSGTDGSLEGPATYIVQGLCRRCCVPEVILRCMQVSVSLMESGNPPESHDELVELVACSETGFLHLFSQHQLQSMKICWLEAEVVGSDAAH

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14301	NUP107, NUP84	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005643	cellular_component	nuclear pore
GO:0017056	molecular_function	structural constituent of nuclear pore

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.854
	SRR3591706	second leaf	6.662
	SRR3591707	mature leaf	8.445
	SRR3591708	Shoot apex	24.560
	SRR3591709	Stem	13.798
	SRR3591710	White floral bud	11.040
	SRR3591711	White flower	15.502
	SRR3591712	Green floral bud	14.589
	SRR3591713	Yellow flower	10.810
SRP173429	SRR8316895	Juvenile bud stage	11.086
	SRR8316896	Juvenile bud stage	14.156
	SRR8316897	Juvenile bud stage	7.369
	SRR8316894	Third green stage	5.971
	SRR8316900	Third green stage	12.838
	SRR8316901	Third green stage	11.318
	SRR8316898	Complete white stage	3.179
	SRR8316899	Complete white stage	14.218
	SRR8316903	Complete white stage	4.951
	SRR8316902	Silver flowering stage	2.979
	SRR8316904	Silver flowering stage	5.467
	SRR8316905	Silver flowering stage	1.871
	SRR8316906	Gold flowering stage	7.200
	SRR8316907	Gold flowering stage	4.881
	SRR8316908	Gold flowering stage	6.287
SRP132670	SRR6706286	Control	12.089
	SRR6706287	Light intensity 50%	12.700
	SRR6706288	Light intensity 20%	14.768
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.133
	CNS0095593	Slightly white alabastrum(diploid) 2	7.605
	CNS0095594	Slightly white alabastrum(diploid) 3	6.192
	CNS0095595	Whole white alabastrum(diploid) 2	6.391
	CNS0095596	Whole white alabastrum(diploid) 3	5.649
	CNS0095597	Whole white alabastrum(diploid) 4	6.176
	CNS0095598	Silvery flower (diploied) 1	8.481
	CNS0095599	Silvery flower (diploied) 2	9.136
	CNS0095600	Silvery flower (diploied) 3	7.672
	CNS0095601	Golden flower (diploid) 1	8.184
	CNS0095602	Golden flower (diploid) 2	7.386
	CNS0095603	Golden flower (diploid) 3	8.082
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.502
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.421
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.949
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.161
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.190
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.415
	CNS0095610	Silvery flower (tetraploid) 1	8.462
	CNS0095611	Silvery flower (tetraploid) 2	9.889
	CNS0095612	Silvery flower (tetraploid) 3	8.906
	CNS0095613	Golden flower (tetraploid) 1	4.082
	CNS0095614	Golden flower (tetraploid) 2	7.268
	CNS0095615	Golden flower (tetraploid) 3	5.541
CRA001975	CRR073297	Stem 1	17.815
	CRR073298	Stem 2	15.324
	CRR073299	Stem 3	14.127
	CRR073300	Leaf 1	15.204
	CRR073301	Leaf 2	14.121
	CRR073302	Leaf 3	10.553
	CRR073303	Juvenile bud 1	12.175
	CRR073304	Juvenile bud 2	6.629
	CRR073305	Juvenile bud 3	14.264
	CRR073306	Third green 1	1.516
	CRR073307	Third green 2	1.781
	CRR073308	Third green 3	2.771
	CRR073309	Second white 1	2.612
	CRR073310	Second white 2	3.207
	CRR073311	Second white 3	3.288
	CRR073312	Silver flowering 1	2.603
	CRR073313	Silver flowering 2	2.667
	CRR073314	Silver flowering 3	2.580
	CRR073315	Gold flowering 1	7.302
	CRR073316	Gold flowering 2	10.015
	CRR073317	Gold flowering 3	6.911
	CRR073318	Tawny withering 1	10.690
	CRR073319	Tawny withering 2	9.929
	CRR073320	Tawny withering 3	11.297