Gene detail

Detail information of GWHGAAZE031119

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004141719.1	8.1184E-147	PREDICTED: 25.3 kDa vesicle transport protein-like [Cucumis sativus]
Swissprot	tr\|Q94AU2\|SEC22_ARATH	4E-143	25.3 kDa vesicle transport protein
trEMBL	tr\|A0A0A0K6X0\|A0A0A0K6X0_CUCSA	4E-147	Uncharacterized protein {ECO:0000313\|EMBL:KGN45465.1}
TAIR10	AT1G11890.1	5E-113	Synaptobrevin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	53576522	53581331	-
GWHAAZE00000009	mRNA	53576522	53581331	-
GWHAAZE00000009	exon	53581050	53581331	-
GWHAAZE00000009	exon	53579640	53579835	-
GWHAAZE00000009	exon	53579390	53579536	-
GWHAAZE00000009	exon	53578152	53578228	-
GWHAAZE00000009	exon	53576522	53576605	-
GWHAAZE00000009	CDS	53581050	53581331	-
GWHAAZE00000009	CDS	53579640	53579835	-
GWHAAZE00000009	CDS	53579390	53579536	-
GWHAAZE00000009	CDS	53578152	53578228	-
GWHAAZE00000009	CDS	53576522	53576605	-

Transcript Sequence
>GWHTAAZE031153 ATGGTGAAGCTGACAATGATTGCTCGTGTTACTGATGGTCTTCCTCTAGCAGAGGGTCTGGATGATGGACGGGATATGCAAGATGCAGAATTCTACAAACAACAAGTTAAGGCTTTGTTCAAGAACCTCTCAAGAGGCCAGAATGAAGCCTCTAGGATGTCTGTTGAAACTGGCCCTTATGTTTTCCAGTATCCTTTTGCATTTGAAATTCATCTTTATCCCCCTTCCTCATGTAGTGGAGTAAAAAATTTCCCACATTCTGGCTACTGTTTATTCTCCCAGTTCCTTTTTACCAGTTCTTTCCTAACAGAACACAGTTATATCATTGAAGGACGTGTGTGTTATTTGACAATGTGTGATCGTGCTTATCCAAAGAAACTTGCGTTTCAATACCTGGAAGATCTTAAGAATGAATTTGAACGTGTCAATGGGAGTCAAATTGAAACTGCAGCAAGACCTTATGCTTTCATAAAATTTGATACGTTCATACAGAAAACAAAGAAATTGTACCAGGACACAAGAACACAGAGGAATATTGCAAAGCTGAATGATGAACTTTATGAAGTTCACCAAATAATGACTCGCAATGTACAGGAGGTTCTTGGTGTTGGTGAAAAGTTGGACCAGGTCAGTCAAATGTCTAGCCGCTTGACATCAGAATCTCGCATATATGCCGATAAAGCAAAAGATCTAAATCGACAGGCTTTGATTCGGAAATGGGCGCCTGTTGCAATTGTGATTGGAGTTGTTTTCCTCCTTTTCTGGGTGAAAAAGAAGATTTGGTGA

Network for GWHGAAZE031119

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13774.7	Longin	39	161	1.00E-17
PF00957.22	Synaptobrevin	176	256	4.50E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08517	SEC22	SNARE interactions in vesicular transport	map04130
K08517	SEC22	Phagosome	map04145

Gene Ontology

GO term	Ontology	Name
GO:0016192	biological_process	vesicle-mediated transport
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.393
	SRR3591706	second leaf	17.330
	SRR3591707	mature leaf	12.680
	SRR3591708	Shoot apex	25.525
	SRR3591709	Stem	25.235
	SRR3591710	White floral bud	29.979
	SRR3591711	White flower	21.548
	SRR3591712	Green floral bud	34.609
	SRR3591713	Yellow flower	17.077
SRP173429	SRR8316895	Juvenile bud stage	17.274
	SRR8316896	Juvenile bud stage	25.009
	SRR8316897	Juvenile bud stage	12.288
	SRR8316894	Third green stage	13.990
	SRR8316900	Third green stage	33.349
	SRR8316901	Third green stage	30.926
	SRR8316898	Complete white stage	17.283
	SRR8316899	Complete white stage	38.802
	SRR8316903	Complete white stage	22.404
	SRR8316902	Silver flowering stage	12.042
	SRR8316904	Silver flowering stage	19.480
	SRR8316905	Silver flowering stage	7.554
	SRR8316906	Gold flowering stage	19.437
	SRR8316907	Gold flowering stage	17.318
	SRR8316908	Gold flowering stage	17.966
SRP132670	SRR6706286	Control	9.878
	SRR6706287	Light intensity 50%	10.492
	SRR6706288	Light intensity 20%	11.564
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.306
	CNS0095593	Slightly white alabastrum(diploid) 2	19.391
	CNS0095594	Slightly white alabastrum(diploid) 3	17.767
	CNS0095595	Whole white alabastrum(diploid) 2	19.963
	CNS0095596	Whole white alabastrum(diploid) 3	21.235
	CNS0095597	Whole white alabastrum(diploid) 4	17.343
	CNS0095598	Silvery flower (diploied) 1	18.793
	CNS0095599	Silvery flower (diploied) 2	15.464
	CNS0095600	Silvery flower (diploied) 3	25.473
	CNS0095601	Golden flower (diploid) 1	16.206
	CNS0095602	Golden flower (diploid) 2	22.521
	CNS0095603	Golden flower (diploid) 3	21.039
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.617
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.445
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.263
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.986
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.380
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.778
	CNS0095610	Silvery flower (tetraploid) 1	20.664
	CNS0095611	Silvery flower (tetraploid) 2	21.665
	CNS0095612	Silvery flower (tetraploid) 3	22.022
	CNS0095613	Golden flower (tetraploid) 1	12.273
	CNS0095614	Golden flower (tetraploid) 2	19.013
	CNS0095615	Golden flower (tetraploid) 3	12.371
CRA001975	CRR073297	Stem 1	22.564
	CRR073298	Stem 2	23.312
	CRR073299	Stem 3	18.435
	CRR073300	Leaf 1	20.282
	CRR073301	Leaf 2	19.618
	CRR073302	Leaf 3	22.203
	CRR073303	Juvenile bud 1	22.528
	CRR073304	Juvenile bud 2	18.094
	CRR073305	Juvenile bud 3	17.297
	CRR073306	Third green 1	8.595
	CRR073307	Third green 2	11.207
	CRR073308	Third green 3	8.885
	CRR073309	Second white 1	6.469
	CRR073310	Second white 2	6.428
	CRR073311	Second white 3	4.557
	CRR073312	Silver flowering 1	6.171
	CRR073313	Silver flowering 2	4.762
	CRR073314	Silver flowering 3	5.607
	CRR073315	Gold flowering 1	13.713
	CRR073316	Gold flowering 2	10.835
	CRR073317	Gold flowering 3	6.247
	CRR073318	Tawny withering 1	21.231
	CRR073319	Tawny withering 2	17.980
	CRR073320	Tawny withering 3	29.952