Gene detail

Detail information of GWHGAAZE031133

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654371.1	0	PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Vitis vinifera]
COG	NP_147591.2	1E-20	thermosome alpha subunit
Swissprot	tr\|Q9LUM0\|FAB1B_ARATH	0	1-phosphatidylinositol-3-phosphate 5-kinase FAB1B
trEMBL	tr\|A0A068TNK7\|A0A068TNK7_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO97796.1}
TAIR10	AT3G14270.1	0	phosphatidylinositol-4-phosphate 5-kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	53782337	53794695	+
GWHAAZE00000009	mRNA	53782337	53794695	+
GWHAAZE00000009	exon	53782337	53782904	+
GWHAAZE00000009	exon	53785630	53785789	+
GWHAAZE00000009	exon	53786260	53787012	+
GWHAAZE00000009	exon	53787721	53787874	+
GWHAAZE00000009	exon	53788033	53788377	+
GWHAAZE00000009	exon	53788715	53789587	+
GWHAAZE00000009	exon	53789685	53790016	+
GWHAAZE00000009	exon	53790239	53790362	+
GWHAAZE00000009	exon	53790452	53790622	+
GWHAAZE00000009	exon	53791334	53792893	+
GWHAAZE00000009	exon	53794017	53794283	+
GWHAAZE00000009	exon	53794363	53794695	+
GWHAAZE00000009	CDS	53782337	53782904	+
GWHAAZE00000009	CDS	53785630	53785789	+
GWHAAZE00000009	CDS	53786260	53787012	+
GWHAAZE00000009	CDS	53787721	53787874	+
GWHAAZE00000009	CDS	53788033	53788377	+
GWHAAZE00000009	CDS	53788715	53789587	+
GWHAAZE00000009	CDS	53789685	53790016	+
GWHAAZE00000009	CDS	53790239	53790362	+
GWHAAZE00000009	CDS	53790452	53790622	+
GWHAAZE00000009	CDS	53791334	53792893	+
GWHAAZE00000009	CDS	53794017	53794283	+
GWHAAZE00000009	CDS	53794363	53794695	+

Transcript Sequence
>GWHTAAZE031167 ATGGATGCCTCCGACAAGCCATTATCTGAACTAGTAGGCACATTGAAATCGTGGATCCCTTGGCGGTCTGAGACAGCTAATGTGTCAAGGGACTTTTGGATGCCAGATCAGAGCTGTAGGGTATGCTACGACTGTGATTCTCAGTTCACGTGGCTTAATCGCAGGCACCACTGTCGATTTTGCGGTCGAGTTTTCTGTGCCAAGTGTACTGCAAACTGGGTACCTGCACCATCCAGCGAACAGAGTGAAGATTGGGAGAAAATTAGGGTTTGTAATTACTGCTTCAAGGAATGGGAACAAGGCTTAGTAACTACGGTTGTTGATAATGAGGTCCAGGTCACCAGCCTGGATCTCAGTACTTCACCATCGGCTACCAGCTTTGTTAGCACCAAATCTAGTGACACTGCCGACAGTAGTAGCATTACTCTGCCACACTCAGTTGGCTCTTACCAAAAAAAACCACCATATCCTTCTGGACTGAGCCCACATCAATCAACTGTAATGGAAACAACTGTAGACAGAAAAAGTGTAGTAGCATCAAGGAGTAATGATCATGTCGCAAACACGGACTTAGATGGACCTGAAGAGGAAACAGGAGCAAAGAAAGAGAAAGGAAGAGCAAATATTATGACAACGGAGCATCTCAAGGCCCGCTACTGGACACAATGCCAGAGTAGAGCGAAATCGATGCATGTTCCCCATATGCTTCGAGCTAAAGCCATGGCAATGAGTGATGATGAGGATGATGAATTTGGAGTTTATCCGTTAGATTCCAGAACAGGTCATTTTCCTCGGGTTAATGGCTACTTTGATCAAGTTCAGTTTGATGAGATTGACAATGAATATGGATCACTTAAAATTCATCCTGATGGAGAATCTATGGATACGAAATGTATGAGCAGCTCTCCATTACATAATAGTTTCAACTCCCCTGGTTCCGAAGGAGTACAACAACTTGCTAAAAAAGAAGTTGAACATGACATCAGTGATGAATGTGAAGCCCCTTCGTCTTTATATGCTGCAGGAGATGTTGATGCTGAACCTGTGGATTTTGAGAACAATGGAGTTCTCTGGCTCCCGCCTGAACCAGAAGATGAAGAAGATGAGAGGGAAGCTCTTTTGTTTGATGATGATGACGATGATGATGATGGGGATGCCACTGGAGAGTGGGGATATTTACGCTCTTCAAACAGTTTTGGAAGTGGGGAGCATCGCAATAGGGACAAGTCGAATGAGGAGCACAAAAAGGCCATTAAGAATGTGGTTGATGGGCACTTCAGGGCTTTGGTGGCTCAGTTGTTGCAGGTTGAGAACCTTCCCTTTGGTGAGGATGATGAAAGAGACAGTTGGTTAGAGATAATTACGTCTCTCTCCTGGGAGGCTGCTTCTTTACTAAAGCCGGACATGAGCAAAGGTGGGGGAATGGACCCAGGAGGATATGTGAAGATAAAATGTTTAGCTTCTGGGAGTCGCTGTCAGAGCATGGTGGTCAAAGGAGTTGTTTGTAAGAAAAATGTGGCTCATCGGCGGATGACATCAAAAATAGAGAAACCACGTTTTTTGATCCTTGGAGGAGCTCTAGAGTATCAACGGGTTTCTAACCATTTGTCGAGTTTTGATACTCTGTTGCAGCAGGAAATGGACCATCTAAAAATGGCTGTCGCAAAGATAGACTCACACAATCCTGATGTCCTTTTGGTTGAGAAATCAGTTTCACGGTATGCACAAGAGTACCTTCTTGCGAAAGATATATCGCTTGTTCTCAATATCAAAAGGCCACTGTTGGAGCGCATAGCCCGCTGCACAGGTAGTCAGATAGTCCCTTCAATTGATCATCTATCATCGCAGAAGCTTGGATATTGTGATATGTTCCATGTTGAGAGGTTTGTAGAAGAGCATGGCTCTGCAGGGCAAAATGGGAAAAAGTTGGTGAAGACCTTGATGTATTTTGAGGGCTGTCCAAAGCCATTGGGTTGCACTATATTACTCAGAGGAGCTAATGGGGATGAGCTGAAGAAAGTGAAACATGTAGTCCAGTATGGAGTTTTTGCAGCTTATCACTTGGCTATGGAAACATCCTTTCTTGCCGATGAAGGGGCCACTTTGCCCGAGTTTCCGTTGAATTCTCCAATAACCGTGGCACTTCCAGATAAAGCATCAAGTATTGATAGATCAATCTCAACTATTCCGGGTTTCTCTTTTCCTGCCAATGAGAAAACTATGGGGCCTCAATCTGCTGGTGGACCAGCAAGGTCCAACAGTGTCCCCAGTTCAGATATGCTTTCTTCGGATGCAAATGCATCCTCTATTGCAATGGAAATAAAGCCATTGCCTTCGAGTTTTGCCAACTCTGTTGCTGCTTTCTCCATTTCTTTTCCCAGCCATGATTTTTCAGGACCTAGTGGCTGCAAGCCTACTCCTTATCATGCATCTGTGGACAGAAGTATTGAGAAAGATTCTTCTGAGGCAAAACATTCTGCAGACAACACAGGCCTGGATGTAAAGAGGAATGGTCTTGTTGCTAATGGTTTTGGGCCTCCACACGCACTGGGACAAGGTGCTGTGCCCAACAATTTGCAAAATGATTGCAGTAAATCTGGTGGTTCAACTACAAGTACTTTGGATCCATCATCTTTGCAAGTAGATGGTAAAAATGTAACCGAGGAACCAGTTTCTTCAAAGGAGGAGTTTCCTCCGTCTCCTTCTGACCATCAGAGCATTTTGGTTTCTTTGTCCTCCCGGTGTGTGTGGAAGGGGACTGTCTGTGAAAGGTCCCATCTTTTTCGAATCAAATACTACGGCAACTTTGATAAACCGTTGGGCCGTTTTCTAAGAGATCATCTGTTTGATCAAAATTACAGATGTCGTTCTTGTGAGATGCCATCAGAAGCACACGTACAATGTTATACTCATCGACAAGGCACCCTCACTATTTCTGTGAAGAAGTTGCCAGAATTTCTCTTACCAGGTGAAAGGGAGGGAAAGATTTGGATGTGGCACAGGTGCCTGAAGTGTCCACGGACCAATGGTTTTCCACCGGCAACTCGAAGGATAGTGATGTCTGATGCTGCTTGGGGTCTGTCCTTCGGGAAGTTTCTGGAACTCAGTTTTTCAAATCATGCTGCTGCTAGCAGGGTTGCAAGTTGTGGACATTCTCTACATAGAGACTGTCTTCGGTTCTATGGATTTGGGAAAATGGTTGCTTGCTTTCGCTATGCGTCAATTGATGTTCACTCAGTCTACCTTCCACCCCCCAAACTTGATTTTAACTATGAGAATCAGGAGTGGATACAAAAGGAACTGCAGGAGGTGGTGGGCAGGGCAGAGCTTTTGTTTTCTGAAGTACTCAGTGCTCTGCATAAGATGGTGCAGAAAAGGTCTGGATCAGGTTCACTTGTCAGCAACATGAAAGCGCCCGAATCCCGATGCCAAACAGCAGATTTAGAGGGGATGCTACAGAATGAGAAGGCAGAATTCGAGGAATCGGTCCACAAGATCATGAACAAAGGAGTAAAAAAGGGCCAACCTATTATTGATATTCTTGAGATAAATCGACTGAGAAGGCAGTTACTCTTCCAGTCTTACATGTGGGACCACCGGTTGATTTATGTGGTCGGTTTAAATAACAACAGCCTTGAAGCTGATCTGAGTAGCTGTAGTCCGGACAGTGATGAGAAACCGCAATTTGCCGATGAGAAGCTCACTTATATGAATATGCATATTCAGCCAGGCAAAGACTCAGGTAGTTGTGATTCTATGGTTGCAGATGCAAAGCTCAATGAAAGCCAGAACCAAGAAGTAGAATGTGGCAGACATGTTAATCTGCCCAGCCCCAAATTAGTTCAACATGGAGTTGACATGGGTTTGGATCCGAATATGGTAAAAGAAAATCAAGCTTATCTCTCTGCTGCTGGTATAAAAGTTTGCGATGACTCTAATCCTTCAAAATGCAAAGCAACTGTTCGTAGGTCCCTCTCTGATGGGCAGTTCCCGACAGTGGCAAGTTTGTCAGACACTCTTGATGCAGCATGGACTGGTGAAAATCACCAAGGGATTGGTGGAATAACAACAAAGGATAATAATGATTGTGCGTTGTCTGAATCAGCTGTGGCAGATTCTTCTTCAACCTTGGCAGAAAATTTAGATTTGGAAGACCATGGAGAAGACCAGAAGGTATCCCGTACGCCTCGTGTGGCGTCCACCAAAGGCTCTGATAGCTTGGAAGATTCTGTGAGCTGGTTGGGAATGCCCTTCATAAACTTCTATCGCTCATTGAACAAGAACTTTTTAGGGAGTGCTGAGAAATTGGATTCGCTTAGCGAGTATAATCCTGTCTACATCTCATCTTTCCGGGAGGCAGAACAACAAGGAGGGGCTAGGTTGCTTCTCCCTGTCGGTGATAATGATACAATTGTCCCAGTTTATGATGATGAACCCACAAGTATCATCTCTTACGCGCTGCTTTCCCCCGATTATCTTGGCCAACTATCTGACGAGTTTGAAAGACCAAAAGACAGCGGGGATTCAACTTTTTCATTGTCCACTGATTTTGGAGGGAATTTGCCGTCTTTCCACTCTGTTGATGAAATGGCCTTGGAATCTTTCCGAAGTCTTGGATCTACAGATGACAGCATTTTATCCATGTCAGCCTCCCGTAGCTCCCTTGTTTTGGATCCCCTATTATACACAAAGACTTTGCATGCTAGAGTGTCTTTCGGAGATGATGGACCTCTTGGTAAGGTAAAATATACTGTGACATGTTACTACGCCAAGCGGTTTGAAGCCCTGAGAAGGATATGCTGCCCATCTGAAGTGGATTTTATAAGGTCTCTTAGCCGGTGTAAGAAGTGGGGAGCCCAAGGTGGCAAGAGCAATGTCTTCTTTGCAAAAACCTTAGATGACCGGTTTATAATCAAACAGGTTACAAAGACAGAGCTGGAATCATTTATAAAGTTTGCTCCTGGATATTTCAAATATCTGTCTGAATCAATTGGCATGGGATGTCCAACATGCCTGGCAAAGATTCTGGGAATTTACCAGGTGACATCAAAGCATTTCAAAGGTGGAAAGGAGTCAAAAATGGATGTGTTGGTTATGGAGAATCTTCTGTTTGGAAGAAATGTGACGCGTTTGTACGATCTCAAAGGATCGTCAAGGTCGAGGTATAATCCAGATTCGAGTGGAAGTAATAAGGTATTGCTGGATCAGAATTTGATTGAAGCAATGCCAACTTCTCCCATATTTGTTGGAAACAAGGCAAAGCGCTTGTTGGAAAGAGCTGTCTGGAATGATACTGCTTTTCTTGCTTCAATTGATGTAATGGATTATTCATTACTGGTGGGGGTGGATGAAGAGAAACATGAACTTGTACTCGGGATTATAGACTTCATGAGACAATACACATGGGACAAGCACCTGGAAACATGGGTGAAGGCTTCTGGAATCCTAGGTGGGCCCAAGAACGCATCTCCAACAGTAATTTCACCAAAGCAATACAAGAAGAGGTTCAGAAAAGCCATGACTACCTATTTTCTGATGGTACCGGATCAGTGGTCACCCCCTACTATCATTCAGAGCAAGTCCCAGACGGATCTTCTTTGCGAAGAAAATAATACTCAGACAGGGACCTTTGCCGAGTGA

Network for GWHGAAZE031133

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01363.22	FYVE	33	98	1.80E-17
PF00118.25	Cpn60_TCP1	449	696	2.40E-32
PF01504.19	PIP5K	1620	1786	1.90E-33

Protein Sequence

>GWHPAAZE031151
MDASDKPLSELVGTLKSWIPWRSETANVSRDFWMPDQSCRVCYDCDSQFTWLNRRHHCRFCGRVFCAKCTANWVPAPSSEQSEDWEKIRVCNYCFKEWEQGLVTTVVDNEVQVTSLDLSTSPSATSFVSTKSSDTADSSSITLPHSVGSYQKKPPYPSGLSPHQSTVMETTVDRKSVVASRSNDHVANTDLDGPEEETGAKKEKGRANIMTTEHLKARYWTQCQSRAKSMHVPHMLRAKAMAMSDDEDDEFGVYPLDSRTGHFPRVNGYFDQVQFDEIDNEYGSLKIHPDGESMDTKCMSSSPLHNSFNSPGSEGVQQLAKKEVEHDISDECEAPSSLYAAGDVDAEPVDFENNGVLWLPPEPEDEEDEREALLFDDDDDDDDGDATGEWGYLRSSNSFGSGEHRNRDKSNEEHKKAIKNVVDGHFRALVAQLLQVENLPFGEDDERDSWLEIITSLSWEAASLLKPDMSKGGGMDPGGYVKIKCLASGSRCQSMVVKGVVCKKNVAHRRMTSKIEKPRFLILGGALEYQRVSNHLSSFDTLLQQEMDHLKMAVAKIDSHNPDVLLVEKSVSRYAQEYLLAKDISLVLNIKRPLLERIARCTGSQIVPSIDHLSSQKLGYCDMFHVERFVEEHGSAGQNGKKLVKTLMYFEGCPKPLGCTILLRGANGDELKKVKHVVQYGVFAAYHLAMETSFLADEGATLPEFPLNSPITVALPDKASSIDRSISTIPGFSFPANEKTMGPQSAGGPARSNSVPSSDMLSSDANASSIAMEIKPLPSSFANSVAAFSISFPSHDFSGPSGCKPTPYHASVDRSIEKDSSEAKHSADNTGLDVKRNGLVANGFGPPHALGQGAVPNNLQNDCSKSGGSTTSTLDPSSLQVDGKNVTEEPVSSKEEFPPSPSDHQSILVSLSSRCVWKGTVCERSHLFRIKYYGNFDKPLGRFLRDHLFDQNYRCRSCEMPSEAHVQCYTHRQGTLTISVKKLPEFLLPGEREGKIWMWHRCLKCPRTNGFPPATRRIVMSDAAWGLSFGKFLELSFSNHAAASRVASCGHSLHRDCLRFYGFGKMVACFRYASIDVHSVYLPPPKLDFNYENQEWIQKELQEVVGRAELLFSEVLSALHKMVQKRSGSGSLVSNMKAPESRCQTADLEGMLQNEKAEFEESVHKIMNKGVKKGQPIIDILEINRLRRQLLFQSYMWDHRLIYVVGLNNNSLEADLSSCSPDSDEKPQFADEKLTYMNMHIQPGKDSGSCDSMVADAKLNESQNQEVECGRHVNLPSPKLVQHGVDMGLDPNMVKENQAYLSAAGIKVCDDSNPSKCKATVRRSLSDGQFPTVASLSDTLDAAWTGENHQGIGGITTKDNNDCALSESAVADSSSTLAENLDLEDHGEDQKVSRTPRVASTKGSDSLEDSVSWLGMPFINFYRSLNKNFLGSAEKLDSLSEYNPVYISSFREAEQQGGARLLLPVGDNDTIVPVYDDEPTSIISYALLSPDYLGQLSDEFERPKDSGDSTFSLSTDFGGNLPSFHSVDEMALESFRSLGSTDDSILSMSASRSSLVLDPLLYTKTLHARVSFGDDGPLGKVKYTVTCYYAKRFEALRRICCPSEVDFIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVTKTELESFIKFAPGYFKYLSESIGMGCPTCLAKILGIYQVTSKHFKGGKESKMDVLVMENLLFGRNVTRLYDLKGSSRSRYNPDSSGSNKVLLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDTAFLASIDVMDYSLLVGVDEEKHELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTVISPKQYKKRFRKAMTTYFLMVPDQWSPPTIIQSKSQTDLLCEENNTQTGTFAE

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
K00921	PIKFYVE, FAB1	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Phosphatidylinositol signaling system	map04070
		Phagosome	map04145
		Regulation of actin cytoskeleton	map04810

Gene Ontology

GO term	Ontology	Name
GO:0046488	biological_process	phosphatidylinositol metabolic process
GO:0005524	molecular_function	ATP binding
GO:0016307	molecular_function	phosphatidylinositol phosphate kinase activity
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.546
	SRR3591706	second leaf	12.208
	SRR3591707	mature leaf	15.700
	SRR3591708	Shoot apex	12.839
	SRR3591709	Stem	37.418
	SRR3591710	White floral bud	32.070
	SRR3591711	White flower	38.624
	SRR3591712	Green floral bud	25.646
	SRR3591713	Yellow flower	37.599
SRP173429	SRR8316895	Juvenile bud stage	10.088
	SRR8316896	Juvenile bud stage	17.178
	SRR8316897	Juvenile bud stage	8.630
	SRR8316894	Third green stage	8.159
	SRR8316900	Third green stage	20.823
	SRR8316901	Third green stage	21.406
	SRR8316898	Complete white stage	9.008
	SRR8316899	Complete white stage	22.918
	SRR8316903	Complete white stage	21.673
	SRR8316902	Silver flowering stage	15.201
	SRR8316904	Silver flowering stage	23.453
	SRR8316905	Silver flowering stage	10.859
	SRR8316906	Gold flowering stage	38.338
	SRR8316907	Gold flowering stage	31.454
	SRR8316908	Gold flowering stage	37.850
SRP132670	SRR6706286	Control	17.916
	SRR6706287	Light intensity 50%	19.444
	SRR6706288	Light intensity 20%	20.350
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.212
	CNS0095593	Slightly white alabastrum(diploid) 2	9.521
	CNS0095594	Slightly white alabastrum(diploid) 3	9.308
	CNS0095595	Whole white alabastrum(diploid) 2	14.113
	CNS0095596	Whole white alabastrum(diploid) 3	12.901
	CNS0095597	Whole white alabastrum(diploid) 4	16.322
	CNS0095598	Silvery flower (diploied) 1	11.888
	CNS0095599	Silvery flower (diploied) 2	10.610
	CNS0095600	Silvery flower (diploied) 3	38.642
	CNS0095601	Golden flower (diploid) 1	12.973
	CNS0095602	Golden flower (diploid) 2	39.241
	CNS0095603	Golden flower (diploid) 3	38.803
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.293
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.916
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.238
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.872
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.968
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.727
	CNS0095610	Silvery flower (tetraploid) 1	33.194
	CNS0095611	Silvery flower (tetraploid) 2	31.240
	CNS0095612	Silvery flower (tetraploid) 3	34.642
	CNS0095613	Golden flower (tetraploid) 1	17.637
	CNS0095614	Golden flower (tetraploid) 2	27.270
	CNS0095615	Golden flower (tetraploid) 3	55.575
CRA001975	CRR073297	Stem 1	20.790
	CRR073298	Stem 2	19.602
	CRR073299	Stem 3	13.293
	CRR073300	Leaf 1	28.624
	CRR073301	Leaf 2	20.464
	CRR073302	Leaf 3	18.065
	CRR073303	Juvenile bud 1	19.684
	CRR073304	Juvenile bud 2	15.798
	CRR073305	Juvenile bud 3	28.236
	CRR073306	Third green 1	26.212
	CRR073307	Third green 2	16.015
	CRR073308	Third green 3	23.315
	CRR073309	Second white 1	20.566
	CRR073310	Second white 2	23.795
	CRR073311	Second white 3	36.645
	CRR073312	Silver flowering 1	39.974
	CRR073313	Silver flowering 2	40.297
	CRR073314	Silver flowering 3	27.610
	CRR073315	Gold flowering 1	10.087
	CRR073316	Gold flowering 2	16.048
	CRR073317	Gold flowering 3	13.026
	CRR073318	Tawny withering 1	23.307
	CRR073319	Tawny withering 2	17.908
	CRR073320	Tawny withering 3	19.814