Gene detail

Detail information of GWHGAAZE031139

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009606552.1	0	PREDICTED: pectinesterase/pectinesterase inhibitor U1 [Nicotiana tomentosiformis]
COG	YP_005010945.1	6E-52	pectinesterase
Swissprot	tr\|Q43143\|PMEU1_SOLLC	0	Pectinesterase U1 (Precursor)
trEMBL	tr\|M1AIV9\|M1AIV9_SOLTU	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT3G14310.1	0	pectin methylesterase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	53855459	53858975	-
GWHAAZE00000009	mRNA	53855459	53858975	-
GWHAAZE00000009	exon	53855459	53856150	-
GWHAAZE00000009	exon	53857889	53858975	-
GWHAAZE00000009	CDS	53857889	53858975	-
GWHAAZE00000009	CDS	53855459	53856150	-

Transcript Sequence
>GWHTAAZE031173 ATGACTACGACTACTACCACTACCCCCATCAAAAGATTCTTCGCCGGAATGTCAGATTCCAGCAGACAAATGACCCCCTCTAACAAAAGGAAAAAACTCTTCCTAGCCATTTTCGCTTCCGTCCTTCTCGTGGCCGCCGTAATCGGCATCGTGGCCGGAGTAAAGTCTCAAAACAACTCCAAATCCAGCACCCATTCGGCAAGCATCATATCCACTTCAGCTCACACAGTACTAAAATCGTCGTGCAGTAGCACACTGTACCCCGATTTATGCTTCTCAACTCTGGCCTCGGAACCCGAATTGAGCAGCAAGGTAACGAGCCAAAAGGACGTTATCGAAGTCTCCATAAACATCACAACAAGGGCCGTCCAGCACAACTACTTCACCATAGAGAAACTTTATTTATGGAAGAACCTAACCAAGCGCGAGAAATTTGCTCTCCACGATTGCCTCGAGACAATCGACGAGACACTCATTGAGCTCCGCAAGGCCTACGATGATCTGGAGGAATACCCTACCAAAAAATCCCTATCCGCTCACGCCGATGACCTCAAAACTCTCCTCAGTTCCGCCATTACCAACCAAGAGACCTGCATCGACGGATTCTCCCACGACGACGCCGATAGGAAAGTGCGAAAAATTCTGATAAAAGGTCAGAGGAAAGTCGAGAAGCTTTGCAGTAACGTGCTTGCGATGATTAAAAACATGACTGATACGGATATGGAGAATGAGATGAAGTTAACGGGGAGGAATCTGAGGGAGCAGGAGGAGAAGAGCGAGTGGCCGGAGTGGCTGTCCGCCGGGGACAGGAGATTGTTGCAATCTCCGTCGGTTACGCCAAATACTGTAGTGGCGGCGGACGGGAGCGGGAACCACAGGACGGTGGCGGCAGCTGTTGCGGCTGCCCCTTCGCGGAGCACCACAAGATACGTGATAAGGATAAAGGCGGGGGTGTACAGGGAAAATGTAGATGTACCGAGCAGTAAGACGAACATAATGTTTATGGGAGACGGGAGAGTTAACACCATCATTACCGCCAGTAGGAACGTCCAGGATGGTAGCACTACCTTCAACTCTGCCACCGTTGCTGCTGTTGGTGAACGATTCTTGGCCCGAGATATAACATTTCAAAACACCGCGGGGCCTTCAAAGCACCAAGCTGTTGCACTTCGTGTTGGGTCCGACTTGTCAGCTTTCTATCGATGTGACATGCTAGCGTACCAAGACACTCTCTACGTCCACTCCAACAGACAATTTTACATAAATTGCCTAGTGGCAGGTACAGTCGATTTCATCTTCGGCAATGCTGAAGCAGTGCTACAAGATTGTGATATCCATGCACGTCGTCCTAATCCCGGGCAGAGGAACATGCTCACAGCCCAAGGTCGGACCGACCCTAACCAGAACACCGGAATTGTAATTCAAAAATGCAGGATCGGTCCCACTTCTGATTTACGTCCCGTTCAGAGTAGTTTCCCGACTTATCTTGGAAGGCCATGGAAAGCATATTCGAGGACAATTGTGATGCAATCAACGATTTCAGACATGATTAATCCGGCAGGGTGGTACCCATGGGACGGCAATTTTGCACTAGACACGTTGTTTTATGGAGAGTATGCAAATACTGGGGCAGGGGCATCCACATCTGGGAGGGTTACATGGAGAGGTTTTAGGGTGATTACAAGTGCAACCGAGGCTCAGAGTTACACGCCTGGGAGTTTCATTGCTGGTGGCAGTTGGTTGGGTTCCACTGGCTTCCCTTACTCTCTTGGTTTATGA

Network for GWHGAAZE031139

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	78	232	1.10E-28
PF01095.20	Pectinesterase	281	577	1.60E-144

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0004857	molecular_function	enzyme inhibitor activity
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	179.524
	SRR3591706	second leaf	143.528
	SRR3591707	mature leaf	15.856
	SRR3591708	Shoot apex	192.936
	SRR3591709	Stem	42.391
	SRR3591710	White floral bud	24.278
	SRR3591711	White flower	25.621
	SRR3591712	Green floral bud	33.429
	SRR3591713	Yellow flower	1.125
SRP173429	SRR8316895	Juvenile bud stage	48.797
	SRR8316896	Juvenile bud stage	38.795
	SRR8316897	Juvenile bud stage	22.530
	SRR8316894	Third green stage	25.600
	SRR8316900	Third green stage	69.893
	SRR8316901	Third green stage	61.864
	SRR8316898	Complete white stage	31.080
	SRR8316899	Complete white stage	36.300
	SRR8316903	Complete white stage	66.903
	SRR8316902	Silver flowering stage	8.243
	SRR8316904	Silver flowering stage	15.505
	SRR8316905	Silver flowering stage	6.399
	SRR8316906	Gold flowering stage	3.544
	SRR8316907	Gold flowering stage	8.115
	SRR8316908	Gold flowering stage	10.416
SRP132670	SRR6706286	Control	104.119
	SRR6706287	Light intensity 50%	107.756
	SRR6706288	Light intensity 20%	95.626
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.064
	CNS0095593	Slightly white alabastrum(diploid) 2	27.913
	CNS0095594	Slightly white alabastrum(diploid) 3	18.972
	CNS0095595	Whole white alabastrum(diploid) 2	26.302
	CNS0095596	Whole white alabastrum(diploid) 3	22.665
	CNS0095597	Whole white alabastrum(diploid) 4	18.775
	CNS0095598	Silvery flower (diploied) 1	143.093
	CNS0095599	Silvery flower (diploied) 2	133.126
	CNS0095600	Silvery flower (diploied) 3	44.910
	CNS0095601	Golden flower (diploid) 1	94.460
	CNS0095602	Golden flower (diploid) 2	75.288
	CNS0095603	Golden flower (diploid) 3	75.632
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.490
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.195
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.665
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.614
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.019
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.436
	CNS0095610	Silvery flower (tetraploid) 1	6.581
	CNS0095611	Silvery flower (tetraploid) 2	17.006
	CNS0095612	Silvery flower (tetraploid) 3	6.745
	CNS0095613	Golden flower (tetraploid) 1	3.918
	CNS0095614	Golden flower (tetraploid) 2	1.674
	CNS0095615	Golden flower (tetraploid) 3	2.194
CRA001975	CRR073297	Stem 1	242.157
	CRR073298	Stem 2	214.982
	CRR073299	Stem 3	302.028
	CRR073300	Leaf 1	117.603
	CRR073301	Leaf 2	118.011
	CRR073302	Leaf 3	159.917
	CRR073303	Juvenile bud 1	84.060
	CRR073304	Juvenile bud 2	133.482
	CRR073305	Juvenile bud 3	162.586
	CRR073306	Third green 1	17.110
	CRR073307	Third green 2	12.664
	CRR073308	Third green 3	12.822
	CRR073309	Second white 1	1.489
	CRR073310	Second white 2	0.766
	CRR073311	Second white 3	0.497
	CRR073312	Silver flowering 1	0.648
	CRR073313	Silver flowering 2	1.177
	CRR073314	Silver flowering 3	3.184
	CRR073315	Gold flowering 1	30.602
	CRR073316	Gold flowering 2	42.028
	CRR073317	Gold flowering 3	43.813
	CRR073318	Tawny withering 1	91.046
	CRR073319	Tawny withering 2	53.525
	CRR073320	Tawny withering 3	86.250