Detail information of GWHGAAZE031142


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011072704.16.8055E-109PREDICTED: RING-H2 finger protein ATL3 [Sesamum indicum]
Swissprottr|Q9XF63|ATL3_ARATH8E-62RING-H2 finger protein ATL3
trEMBLtr|A0A068TQZ8|A0A068TQZ8_COFCA5E-96Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO97783.1}
TAIR10AT1G53820.12E-29RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5390843753909399-
GWHAAZE00000009mRNA5390843753909399-
GWHAAZE00000009exon5390843753909399-
GWHAAZE00000009CDS5390843753909399-
Transcript Sequence

Network for GWHGAAZE031142

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21101531.20E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.011
SRR3591706second leaf3.254
SRR3591707mature leaf3.172
SRR3591708Shoot apex5.054
SRR3591709Stem15.860
SRR3591710White floral bud4.369
SRR3591711White flower4.968
SRR3591712Green floral bud4.293
SRR3591713Yellow flower6.265
SRP173429 SRR8316895Juvenile bud stage 8.559
SRR8316896Juvenile bud stage 3.032
SRR8316897Juvenile bud stage 3.279
SRR8316894Third green stage 3.765
SRR8316900Third green stage 6.481
SRR8316901Third green stage 6.550
SRR8316898Complete white stage 1.431
SRR8316899Complete white stage 10.540
SRR8316903Complete white stage 1.966
SRR8316902Silver flowering stage0.913
SRR8316904Silver flowering stage1.829
SRR8316905Silver flowering stage1.004
SRR8316906Gold flowering stage 5.970
SRR8316907Gold flowering stage 5.470
SRR8316908Gold flowering stage 16.190
SRP132670SRR6706286Control2.536
SRR6706287Light intensity 50%4.533
SRR6706288Light intensity 20%3.451
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.701
CNS0095593Slightly white alabastrum(diploid) 25.740
CNS0095594Slightly white alabastrum(diploid) 36.147
CNS0095595Whole white alabastrum(diploid) 23.951
CNS0095596Whole white alabastrum(diploid) 31.426
CNS0095597Whole white alabastrum(diploid) 43.158
CNS0095598Silvery flower (diploied) 18.534
CNS0095599Silvery flower (diploied) 27.887
CNS0095600Silvery flower (diploied) 35.489
CNS0095601Golden flower (diploid) 118.700
CNS0095602Golden flower (diploid) 212.957
CNS0095603Golden flower (diploid) 311.543
CNS0095604Slightly white alabastrum(tetraploid) 14.293
CNS0095605Slightly white alabastrum(tetraploid) 22.188
CNS0095606Slightly white alabastrum(tetraploid) 37.684
CNS0095607Whole white alabastrum(tetraploid) 12.455
CNS0095608Whole white alabastrum(tetraploid) 21.409
CNS0095609Whole white alabastrum(tetraploid) 34.918
CNS0095610Silvery flower (tetraploid) 13.078
CNS0095611Silvery flower (tetraploid) 21.121
CNS0095612Silvery flower (tetraploid) 31.595
CNS0095613Golden flower (tetraploid) 13.077
CNS0095614Golden flower (tetraploid) 26.390
CNS0095615Golden flower (tetraploid) 32.148
CRA001975CRR073297Stem 14.161
CRR073298Stem 23.377
CRR073299Stem 34.435
CRR073300Leaf 17.883
CRR073301Leaf 26.833
CRR073302Leaf 35.179
CRR073303Juvenile bud 16.495
CRR073304Juvenile bud 24.605
CRR073305Juvenile bud 37.982
CRR073306Third green 13.644
CRR073307Third green 21.573
CRR073308Third green 34.666
CRR073309Second white 10.654
CRR073310Second white 20.603
CRR073311Second white 31.518
CRR073312Silver flowering 112.912
CRR073313Silver flowering 28.091
CRR073314Silver flowering 34.530
CRR073315Gold flowering 13.583
CRR073316Gold flowering 24.292
CRR073317Gold flowering 37.709
CRR073318Tawny withering 17.158
CRR073319Tawny withering 214.387
CRR073320Tawny withering 35.375