Gene detail

Detail information of GWHGAAZE031152

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009614020.1	0	PREDICTED: tyrosine-sulfated glycopeptide receptor 1 [Nicotiana tomentosiformis]
COG	YP_004775215.1	2E-40	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9C7S5\|PSYR1_ARATH	0	Tyrosine-sulfated glycopeptide receptor 1
trEMBL	tr\|M1AIW3\|M1AIW3_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400023733}
TAIR10	AT1G72300.1	0	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	54004684	54007884	-
GWHAAZE00000009	mRNA	54004684	54007884	-
GWHAAZE00000009	exon	54004684	54007884	-
GWHAAZE00000009	CDS	54004684	54007884	-

Transcript Sequence
>GWHTAAZE031186 ATGCTGCTGGAGTTGTTGACCCATCTCAACCTCCGCCGCCGGCTCACCACGCTTAACCACCACTTGTTGCTTTTGGTCATTGTAATCCTCCTCCTCTCCTCTTGCTATGCCAGTCTGTGCAGTGCCGCCTGTAATAAAGTCGATCGCTCCTCTCTCTTGTCGATCCCCCTTAACGTCTCCGATCTCAATTGGCTTCCTTCCGCCGACTGCTGTGACTGGGAGGGAGTTCAGTGCGACGTTAATGATCGAGTCACCCGTTTATGGCTACCCACTAGAGGCCTCCGTGGATTCATTTCTCCTTCTTTCTCAAACCTCGCCAGACTCTCTCAACTCAATCTCTCTCACAATTGCCTCTCCGGTCCTCTCCCAGACTCCTTCTTTGCCTCCTTCCCCACCCTCCAAATCATTGACTTGAGCTTTAACTCTCTCTCTGGACCCTTACCCATCTCCGATACCTTACCGAGTACCCTCCAAGCACTCGATTTATCCAGCAATAGCTTCAATGGCTCAATCCAATCTTCATTTCTACGCCACGCAGTGAACCTGCAGACTTTCAATATCAGCAACAACAGCTTCACCGGAGCAATCCCTTCTTCTTCTATCTGCACCAATTCCCCCTCCCTCAAGATTCTTGATTTCTCCTTCAATGCCTTCCAGGGTCCGATTGGTCAAGGATTTGGGGCGTGTGAGAAGCTGGAGGTTTTACGAGCAGGCTTCAATTTCCTCTCGGGATCTCTCCCCGATGACATTTACAGTGCCCGGGCACTTCAAGAGATCTTCTTGCCGGCAAATAAGCTTACCGGCCCTATTGGGGAATCCATTACTGACCTAGCCAACCTCAGAATCCTTGCACTCTTTGGTAATGACTTCACGGGTTTGATTCCTCAGGGTATTGGGAAGCTGTCTAATCTGGAGCAGTTGCTACTTCACATCAACAGCTTGAATGGCAGTCTCCCCCAATCTCTCATGAATTGCACCAGTCTCAAGACTCTGAATTTACGGGTCAACAATTTTGTTGGGGCATTGGCTGCCCTAGATTTCTCCAAGCTACAGCAATTGGTCACACTTGACCTGGGGAACAATTACTTCAACGGTAGCCTGCCGGCTAGCCTTTTCTCTTGCAAGTCTCTCAATGCAATTCGGCTGGCCACTAACCAGCTACAGGGAGAGATATTGCCAGAAATAATAGCATTGCAATCTTTGTCCTTCCTATCAATTTCTAACAACACCCTAACGAACATCACAGCAGCTTTCCAGATTCTGAAGGGTTGTAAGAAACTCAGCACAATCATCTTCTCAAAGAATTTTTTTGGGGAGGCAATACCTGGTGTTGAAAGCTTTCAAGGATTTCAAAATCTACAGATTCTGGGTTTGGGTGGCTGCCAATTAACTGGTCAAATTCCCAACTGGCTGAAGGAGCTGACGAAGTTAGAGGTCCTTGACCTGTCTCTTAATCAACTCAAAGGCTCAATTCCTGGTTGGTTGGGGAATCTTCCAAACCTATTTTACTTGGACTTGTCTGTAAACTTACTTTGGGGGGACTTCCCAAAGGAATTGATTGAACTGCGAGAACTGGCATCACAGCAAATTGCCGATTCGGTAGACCGTAGTTATTTAGAGTTGCCCGTGTTTGTACAGCCTAATAATGCTTCCAACTTGCAATATAATCAGCTTGCCAACCTGCCACCGGCAATATACCTGGGAAACAACAGCCTCACTGGTAATATCCCTATTGAGATTGGACATTTGAAGTTTATCCATATCCTGGATCTCAGTAATAACAGTTTTTCTGGTACTATTCCGGACCAAATATCTAATCTCACTAACTTGGAAAAACTGGACCTCTCTGGGAACAATTTTTCTGGGAAAATACCTGCATCCCTCAAAAATCTTCATTTCTTGTCTTACTTTAGTGTTGCGAACAACAATCTTCAAGGTCAAATACCAACAGGAGGGCAATTTGATACCTTCTCCAATTCCAGCTATGAAGGAAATCCGGGATTATGCGGCCCAATTCTGCAGCGCCCTTGCTTCGATTCATCATCCACTACACGTCCTTTAGGATCTAGACGAAGCCCAAATAAGAAACTAATTATTGGACTTATCCTTGGGATCTGTTTTGGCATTGGTTTCATCTTGACTGTGATAGCACTGTGGATATTGTCCAATAGGAAGATCCTTCCGAGAGGCGATCCTGATAAATTTGATTTGGAAACAGTATCCTTCAACTCTACTTCTGGAATATCAGCTGAAGTTGGCAAGGATGCCAGTTTAGTCATATTGTTTCCAAACAACACAAACAAAATCAAGGATCTCACAATAGCTGAAATCTTGAAAGCCACTGACAATTTCAACCAGGCAAACATCGTTGGTTGTGGAGGCTTTGGTCTGGTTTACAAAGCAACTTTGGAAAATGGGACCACTGTGGCTGTTAAGAAACTGTCGGGAGATATGGGTCTGATGGAAAGGGAATTCAAAGCTGAAGTTGAAGCTCTATCTACAGCTCAACACAAGAATCTGGTCACCCTGCAAGGTTACTGTGTGCATGACGGCTTACGATTGCTGATATATTCCTACATGGAGAATGGGAGCCTTGACTATTGGTTGCATGAGAAGGCTGATGGAGCGTCACAACTTGATTGGCCAACTCGACTAAAAATCATACAGGGGGCTAGCTATGGGTTGGCTTACATGCACCAGATCTGTGAACCACATATTGTGCATCGTGACATAAAGTCTAGCAACATCCTGTTAGATGAAAAGTTTGAAGCACATGTGGCAGATTTTGGATTGTCGAGATTGATCCTGCCTTATCAAACTCACGTCACCACTGAACTGGTTGGTACACTGGGTTACATACCTCCGGAGTATAGTCAATCATGGATAGCCACTCTGAGAGGGGATATGTACAGTTTTGGGGTTGTGATTCTTGAGCTGCTAACTGGGAAGAGGCCTGTAGAGGTATTCAAGCCAAAAATGTCAAGAGAACTGGTTGTTTGGGTGCAGCAACTGAGAAGTGAAGGCAGGCAAGATGAAGTTTTTGATCCTCTTCTGAGAGGAAAGGGTTTTGAAGAAGAGATGATACAGGTGCTTGATGTGGCCTGCATGTGTGTTAACAGAAACCCTCTCAAGAGGCCGACCATTAAAGAAGTAGTTGAATGGCTCAAGAATGTGGGGTCCAACCGGCAGACACCAAAATGA

Network for GWHGAAZE031152

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	452	511	4.10E-10
PF00560.34	LRR_1	609	631	0.0059
PF00069.26	Pkinase	785	1053	6.60E-41

Protein Sequence

>GWHPAAZE031170
MLLELLTHLNLRRRLTTLNHHLLLLVIVILLLSSCYASLCSAACNKVDRSSLLSIPLNVSDLNWLPSADCCDWEGVQCDVNDRVTRLWLPTRGLRGFISPSFSNLARLSQLNLSHNCLSGPLPDSFFASFPTLQIIDLSFNSLSGPLPISDTLPSTLQALDLSSNSFNGSIQSSFLRHAVNLQTFNISNNSFTGAIPSSSICTNSPSLKILDFSFNAFQGPIGQGFGACEKLEVLRAGFNFLSGSLPDDIYSARALQEIFLPANKLTGPIGESITDLANLRILALFGNDFTGLIPQGIGKLSNLEQLLLHINSLNGSLPQSLMNCTSLKTLNLRVNNFVGALAALDFSKLQQLVTLDLGNNYFNGSLPASLFSCKSLNAIRLATNQLQGEILPEIIALQSLSFLSISNNTLTNITAAFQILKGCKKLSTIIFSKNFFGEAIPGVESFQGFQNLQILGLGGCQLTGQIPNWLKELTKLEVLDLSLNQLKGSIPGWLGNLPNLFYLDLSVNLLWGDFPKELIELRELASQQIADSVDRSYLELPVFVQPNNASNLQYNQLANLPPAIYLGNNSLTGNIPIEIGHLKFIHILDLSNNSFSGTIPDQISNLTNLEKLDLSGNNFSGKIPASLKNLHFLSYFSVANNNLQGQIPTGGQFDTFSNSSYEGNPGLCGPILQRPCFDSSSTTRPLGSRRSPNKKLIIGLILGICFGIGFILTVIALWILSNRKILPRGDPDKFDLETVSFNSTSGISAEVGKDASLVILFPNNTNKIKDLTIAEILKATDNFNQANIVGCGGFGLVYKATLENGTTVAVKKLSGDMGLMEREFKAEVEALSTAQHKNLVTLQGYCVHDGLRLLIYSYMENGSLDYWLHEKADGASQLDWPTRLKIIQGASYGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLSRLILPYQTHVTTELVGTLGYIPPEYSQSWIATLRGDMYSFGVVILELLTGKRPVEVFKPKMSRELVVWVQQLRSEGRQDEVFDPLLRGKGFEEEMIQVLDVACMCVNRNPLKRPTIKEVVEWLKNVGSNRQTPK

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.384
	SRR3591706	second leaf	4.571
	SRR3591707	mature leaf	5.187
	SRR3591708	Shoot apex	4.668
	SRR3591709	Stem	10.961
	SRR3591710	White floral bud	4.186
	SRR3591711	White flower	5.743
	SRR3591712	Green floral bud	2.860
	SRR3591713	Yellow flower	4.074
SRP173429	SRR8316895	Juvenile bud stage	2.745
	SRR8316896	Juvenile bud stage	3.921
	SRR8316897	Juvenile bud stage	1.050
	SRR8316894	Third green stage	2.098
	SRR8316900	Third green stage	4.781
	SRR8316901	Third green stage	5.074
	SRR8316898	Complete white stage	2.197
	SRR8316899	Complete white stage	5.993
	SRR8316903	Complete white stage	6.767
	SRR8316902	Silver flowering stage	2.686
	SRR8316904	Silver flowering stage	4.707
	SRR8316905	Silver flowering stage	1.550
	SRR8316906	Gold flowering stage	5.275
	SRR8316907	Gold flowering stage	5.841
	SRR8316908	Gold flowering stage	5.572
SRP132670	SRR6706286	Control	4.936
	SRR6706287	Light intensity 50%	5.076
	SRR6706288	Light intensity 20%	5.285
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.016
	CNS0095593	Slightly white alabastrum(diploid) 2	1.992
	CNS0095594	Slightly white alabastrum(diploid) 3	2.419
	CNS0095595	Whole white alabastrum(diploid) 2	2.044
	CNS0095596	Whole white alabastrum(diploid) 3	2.403
	CNS0095597	Whole white alabastrum(diploid) 4	2.455
	CNS0095598	Silvery flower (diploied) 1	4.899
	CNS0095599	Silvery flower (diploied) 2	2.718
	CNS0095600	Silvery flower (diploied) 3	6.252
	CNS0095601	Golden flower (diploid) 1	2.596
	CNS0095602	Golden flower (diploid) 2	5.172
	CNS0095603	Golden flower (diploid) 3	4.576
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.936
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.136
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.562
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.628
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.718
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.413
	CNS0095610	Silvery flower (tetraploid) 1	4.072
	CNS0095611	Silvery flower (tetraploid) 2	4.573
	CNS0095612	Silvery flower (tetraploid) 3	2.115
	CNS0095613	Golden flower (tetraploid) 1	1.861
	CNS0095614	Golden flower (tetraploid) 2	3.851
	CNS0095615	Golden flower (tetraploid) 3	2.545
CRA001975	CRR073297	Stem 1	9.915
	CRR073298	Stem 2	10.558
	CRR073299	Stem 3	7.387
	CRR073300	Leaf 1	10.419
	CRR073301	Leaf 2	11.651
	CRR073302	Leaf 3	6.415
	CRR073303	Juvenile bud 1	9.382
	CRR073304	Juvenile bud 2	5.982
	CRR073305	Juvenile bud 3	16.503
	CRR073306	Third green 1	2.539
	CRR073307	Third green 2	3.620
	CRR073308	Third green 3	5.345
	CRR073309	Second white 1	2.636
	CRR073310	Second white 2	1.416
	CRR073311	Second white 3	1.734
	CRR073312	Silver flowering 1	1.498
	CRR073313	Silver flowering 2	2.025
	CRR073314	Silver flowering 3	1.728
	CRR073315	Gold flowering 1	7.213
	CRR073316	Gold flowering 2	10.616
	CRR073317	Gold flowering 3	9.612
	CRR073318	Tawny withering 1	8.950
	CRR073319	Tawny withering 2	7.792
	CRR073320	Tawny withering 3	8.625