Gene detail

Detail information of GWHGAAZE031163

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003632932.1	1.5821E-156	PREDICTED: 60S ribosomal protein L7-2 [Vitis vinifera]
COG	YP_001190213.1	6E-13	50S ribosomal protein L30
Swissprot	tr\|Q9LHP1\|RL74_ARATH	9E-155	60S ribosomal protein L7-4
trEMBL	tr\|D7SS66\|D7SS66_VITVI	6E-157	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI18498.3}
TAIR10	AT3G13580.3	4E-115	Ribosomal protein L30/L7 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	54148336	54149938	+
GWHAAZE00000009	mRNA	54148336	54149938	+
GWHAAZE00000009	exon	54148336	54148524	+
GWHAAZE00000009	exon	54148615	54148712	+
GWHAAZE00000009	exon	54148797	54148854	+
GWHAAZE00000009	exon	54149373	54149452	+
GWHAAZE00000009	exon	54149532	54149634	+
GWHAAZE00000009	exon	54149723	54149938	+
GWHAAZE00000009	CDS	54148336	54148524	+
GWHAAZE00000009	CDS	54148615	54148712	+
GWHAAZE00000009	CDS	54148797	54148854	+
GWHAAZE00000009	CDS	54149373	54149452	+
GWHAAZE00000009	CDS	54149532	54149634	+
GWHAAZE00000009	CDS	54149723	54149938	+

Transcript Sequence
>GWHTAAZE031197 ATGGCTGAAGAGCAAGTCAAGGGTGGTCCTGTGGTGATTCCAGAGTCAGTATTGAAGAAACAAAAGAGGAACGAGGAGTGGGCTTTGGCGAAAAAACAAGAGCTCATGTCCCTGAAGAAGAAGAATGCTGAGAACCGCAAGTTGATTTTCTGCAGAGCTAAGAACTATGCTAAGGAGTATGAGGAGCAGCAAAGAGAGTTGATTCAACTGAAGCGTGAGGCGAGGTTGAAAGGTGGATTTTATGTCAGCCCTGAAGCTAAGCTTTTGTTCATCATTCGTATCCGTGGTATCAACGCTATTGACCCCAAGACAAAAAAGATTTTGCAGCTCTTGCGTCTACGACAGATATTCAATGGCGTTTTCCTGAAAGTCAACAAAGCAACAATTAATATGCTACACAGGGTCGAGCCTTATGTTACTTTTGGTTACCCTAATTTAAAGAGTGTTAAGGAGTTGATTTACAAGAGAGGTTATGGCAAGCTAAACCATCAAAGGACGGCCTTGACTGACAATTCAGTCATTGAACAGGCTTTAGGGAAACATGGCATCATCTGCATTGAAGATCTTATTCATGAGATTTTGACAGTTGGCCCTCATTTTAAGGAGGCCAACAACTTCCTCTGGCCCTTCAAACTGAAGGCACCACTGGGTGGTTTGAAGAAGAAGAGGAACCATTACGTTGAAGGAGGAGATGCTGGAAATCGTGAAGATTTCATCAATGAGCTGATAAGGAGAATGAACTAG

Network for GWHGAAZE031163

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08079.13	Ribosomal_L30_N	14	83	1.80E-24
PF00327.21	Ribosomal_L30	89	139	2.20E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02937	RP-L7e, RPL7	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0022625	cellular_component	cytosolic large ribosomal subunit
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	869.201
	SRR3591706	second leaf	323.461
	SRR3591707	mature leaf	148.147
	SRR3591708	Shoot apex	1038.463
	SRR3591709	Stem	412.424
	SRR3591710	White floral bud	286.446
	SRR3591711	White flower	315.797
	SRR3591712	Green floral bud	626.644
	SRR3591713	Yellow flower	162.323
SRP173429	SRR8316895	Juvenile bud stage	328.076
	SRR8316896	Juvenile bud stage	431.379
	SRR8316897	Juvenile bud stage	277.398
	SRR8316894	Third green stage	196.718
	SRR8316900	Third green stage	602.911
	SRR8316901	Third green stage	548.029
	SRR8316898	Complete white stage	102.322
	SRR8316899	Complete white stage	511.369
	SRR8316903	Complete white stage	150.459
	SRR8316902	Silver flowering stage	89.029
	SRR8316904	Silver flowering stage	113.975
	SRR8316905	Silver flowering stage	45.586
	SRR8316906	Gold flowering stage	161.737
	SRR8316907	Gold flowering stage	146.139
	SRR8316908	Gold flowering stage	233.205
SRP132670	SRR6706286	Control	406.743
	SRR6706287	Light intensity 50%	479.063
	SRR6706288	Light intensity 20%	524.497
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	414.129
	CNS0095593	Slightly white alabastrum(diploid) 2	470.054
	CNS0095594	Slightly white alabastrum(diploid) 3	386.025
	CNS0095595	Whole white alabastrum(diploid) 2	370.838
	CNS0095596	Whole white alabastrum(diploid) 3	428.489
	CNS0095597	Whole white alabastrum(diploid) 4	271.364
	CNS0095598	Silvery flower (diploied) 1	272.107
	CNS0095599	Silvery flower (diploied) 2	233.760
	CNS0095600	Silvery flower (diploied) 3	191.149
	CNS0095601	Golden flower (diploid) 1	171.021
	CNS0095602	Golden flower (diploid) 2	184.185
	CNS0095603	Golden flower (diploid) 3	172.439
	CNS0095604	Slightly white alabastrum(tetraploid) 1	461.359
	CNS0095605	Slightly white alabastrum(tetraploid) 2	419.143
	CNS0095606	Slightly white alabastrum(tetraploid) 3	676.321
	CNS0095607	Whole white alabastrum(tetraploid) 1	219.785
	CNS0095608	Whole white alabastrum(tetraploid) 2	204.925
	CNS0095609	Whole white alabastrum(tetraploid) 3	540.388
	CNS0095610	Silvery flower (tetraploid) 1	239.625
	CNS0095611	Silvery flower (tetraploid) 2	214.988
	CNS0095612	Silvery flower (tetraploid) 3	154.912
	CNS0095613	Golden flower (tetraploid) 1	123.215
	CNS0095614	Golden flower (tetraploid) 2	178.222
	CNS0095615	Golden flower (tetraploid) 3	114.649
CRA001975	CRR073297	Stem 1	571.346
	CRR073298	Stem 2	562.340
	CRR073299	Stem 3	568.809
	CRR073300	Leaf 1	530.821
	CRR073301	Leaf 2	509.021
	CRR073302	Leaf 3	722.933
	CRR073303	Juvenile bud 1	522.923
	CRR073304	Juvenile bud 2	477.604
	CRR073305	Juvenile bud 3	384.363
	CRR073306	Third green 1	89.967
	CRR073307	Third green 2	96.880
	CRR073308	Third green 3	98.205
	CRR073309	Second white 1	80.313
	CRR073310	Second white 2	68.502
	CRR073311	Second white 3	56.827
	CRR073312	Silver flowering 1	82.180
	CRR073313	Silver flowering 2	88.160
	CRR073314	Silver flowering 3	77.035
	CRR073315	Gold flowering 1	188.051
	CRR073316	Gold flowering 2	211.090
	CRR073317	Gold flowering 3	154.850
	CRR073318	Tawny withering 1	459.101
	CRR073319	Tawny withering 2	359.119
	CRR073320	Tawny withering 3	494.763