Gene detail

Detail information of GWHGAAZE031172

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI18445.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9LJX4\|PUM5_ARATH	Pumilio homolog 5
trEMBL	tr\|A0A067JM29\|A0A067JM29_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP25046.1}
TAIR10	AT3G20250.1	pumilio 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	54285089	54292851	+
GWHAAZE00000009	mRNA	54285089	54292851	+
GWHAAZE00000009	exon	54285089	54285730	+
GWHAAZE00000009	exon	54286493	54287913	+
GWHAAZE00000009	exon	54288021	54288162	+
GWHAAZE00000009	exon	54288294	54288389	+
GWHAAZE00000009	exon	54289422	54289634	+
GWHAAZE00000009	exon	54289819	54289929	+
GWHAAZE00000009	exon	54291559	54291753	+
GWHAAZE00000009	exon	54292576	54292851	+
GWHAAZE00000009	CDS	54285089	54285730	+
GWHAAZE00000009	CDS	54286493	54287913	+
GWHAAZE00000009	CDS	54288021	54288162	+
GWHAAZE00000009	CDS	54288294	54288389	+
GWHAAZE00000009	CDS	54289422	54289634	+
GWHAAZE00000009	CDS	54289819	54289929	+
GWHAAZE00000009	CDS	54291559	54291753	+
GWHAAZE00000009	CDS	54292576	54292851	+

Transcript Sequence
>GWHTAAZE031206 ATGGCAACTGAGAGTCCTGTGAGAATAGTGGAAAGCAGCAGAGCTAGGAAGTGGGCCTCTTCTAAGGATGTAACACCATTTGCTTCAGCATTTAATGTTACAGATGCAGATGAGTCGGGGTTTCTTCTGGAGGGGCATGAAATATATGGAGATCTGAGAAAGGTGGTTCCCAATCGAAGTGGTAGTGCACCTCCAAGTGTAGAGGGTTCATTTACAACTTATGGGAACCTTGTGGTGAGCTCTAGTCTGAATTCAAGCTTGGCAAGTTCAAGCAGTGTTTTGGAAAATTGTCAGTCGGAGGAAGAACTACTTTCTGATCCATCATATTTTGCTTATTACTGCTCCAATGTGAACTTGAATCCTAGACTTCCACCACCTATTGTCTCAAGGGAGAACAGGCACCTCGTATGCCAGATTGGTGGCTTTGGCAATAACAGGAAATTAACCTCTTTTGATGATAGTGGCGATGGATCCTTACACTGGTCTAAAGGTTCCCTTTCTACTCATAATGAAGAACCTGAAGATAATTACTTAGCCCAGCAAGACTCGGATGATTGGGCAGAAAGTGCTAACACACTCATGATTGGACACAATGCAGCATCTTCTGCAGGTCGTTGTAAAAGCTTGGTTGATTCAATTCAGGTGGACTTCCCTCGCACTGCATCTCCTGTATGTAATCTGACCCAGCCCCAGGGCCATGGTACTACAGAGGAACCACTCAATCTTGATATTGAAGCCATTTCATCGAATGATCTTTCAATGAATGTTAAAAAGTTCCTGGACTCCGAATCAAGCTCCCTTAATGATCACGTGGGCAAACATAGTGAAGGTGCAAATGCTTGTGAGCTAATTGTCAATGAGGATTCTTTAGTTGCGTTGCTTCCAGAAAACTCAATCCCTTACGTAATGGGGGATTCACCTCCCATGCAAAAAGTTCGATTAAATTGCCAGGATGGTGGTTTACAGGACGATGTGGTAATCAGTGGTGTTGCCAAGTCTGATGCTTCCAGAAACTTTCTTCCCGTGGAGGATATAAAAAGTGAACAAGATCAACAATTTTATGAAAAAAATGTGCAGCAGCCTTGTTCTCCACAAAGCACTTGTTATCAAGTCGAAGGATCTCAATCTCAACTGACTGCTCCACGAGTGAACTACATGCATAATTATGGCACAAAAAAGTTTCAACACACATTCCCTTCAGTTGAGGCACAACCAGTTATGCGACCTCTTGGAATCGTACCACCACCACCTTTGTATGCAGCAGCATCCTATATGACTTCAGGAAACCCACTTTATCCTAATTTAAATCCACCTGCCTTATTATATGATCCACAGTACAGTCCTAGTGGATATGCTCTCAATTCCCCATTCATAGCTGAATATCATTCACATGCTGCTTTTCCAATGCATTTTGATGCCAGTTATGGGCACGGCTTTAATAGTCACACTGCTGGTGTTTCAACAGGAGAAAGCATTTCACATGATGTAAATGATTTGCAGCATTGGAACCAGTTTTATGGACATCACCGATTGATGGTGCAACCTCCTTTTCCAGATCCTCTTCACATGCAATACTTTCAGCGGCATCCTGTTGAGGATGCATATGTTGCTCCAGGACAATATGGTCATTTGGCATCAGCTGGTTTAAAGGTAGACCAAGTTTATTATTTTAATTCTCTGAAAGAATCAAGTAATATTGCTGCTGATAAGAGTGATCAGAAATTTCAGACTCCACCAAATGGAAGTCTCAGCATTCCAAGTCGGGGAATTGCCTACTATTATGGAAGTACCCTCGGAGCAGTTGGTGCCATGACACAGTTTTCAGCATCCCCTTTTGGCCGTCCAATGGTAGTAGGAACAAATCATTCAGGCAGGAGAAATGAAATGAGGATTCCTCAGGGTACTATTAGAAATGATGGATTATACTCCGGATGTCAAGGACAAAGAGGACCTGACAACTTCAATGATCCTAAGAAGTGTTCTTTTCTTGAGGAACTGAAATCTAGCAATTCTTCTAGAAAATTTGACCTATCTGACATTGCAGGGCGCATTGTTGAATTCAGTGTTGATCAACACGGGAGTCGGTATATTCAGCAGAAGCTGGAAAATTGTAGCATTGAACACAAGAGATCTGTTTTCAAAGAAGTTCTTCCACATGCTTCGAAATTAATGACAGATGTTTTTGGCAATTATGTTATTCAAAAGGGAAATCGAGAGCAAAGGAATGAACTTGCAGATCAGCTATCAGGACAGATGCTAACATTAAGTCTGCAAATGTATGGCTGCCGAGTTATTCAAAAGGCCCTCGAGGTAATTGAACCTGATCAAAAAGCAGAACTTGTGCATGAACTTGATGGGCATGTAATGAGATGCGTTCGGGATCAAAACGGAAATCATGTAATACAGAAGTGTATCGAGTGCATCCCTACAGAGAATATTGGATTTATTATCTCTTCTTTCCAAGGTCAAGTGGCCAACCTTTCTACTCATCCCTATGGTTGCCGTGTTATCCAGAGAGTTTTGGAGCATTATTCGGATGAACCGGAAATTCAATGCATAGTGGATGAGATCTTGGAATCTTCTTATCTACTTGCTCAAGACCAGTATGGCAATTACGTAACTCAGCATGTTTTGGAAAGAGGAAATCCTCATGAAAGAAGTCAAATTATCAGCATGTTGACCGGGAAAGTTGTACAAATGAGTCAACATAAATATGCATCAAATGTTATCGAGAAGTGTTTGGAGCATTGCAGTACTGCTGAACAGGAACTTTTGATTGATGAGATTCTTAATCAGCCTGAAGAAAGTGGTAGTTTATTGACGATGATGAAAGACCAATTTGCAAACTATGTGGTCCAGAAGATTCTTGAAATAAGCAATGATAAACAACGGGAAGTGTTGCTCAACTGGATCAGGGCTCATGTTCATTCCTTGAAGAAATACACCTATGGAAAACACATAGTTGGCCGATTTGAACAATTATCTGGTGAAGGTGCGTGTTTTTTCTATTCAGTTTCTCCAATTGTTCCATATAATCTGCAGTTTTCTATATTTTTCCCTTCTCTCCTCTCCGTCTTCCTTTTTTTTGGGTTATGA

Network for GWHGAAZE031172

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0113

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00806.20	PUF	683	717	9.10E-11
PF00806.20	PUF	720	735	0.27
PF00806.20	PUF	751	784	4.20E-10
PF00806.20	PUF	793	817	7.40E-05
PF00806.20	PUF	823	858	1.50E-14
PF00806.20	PUF	863	893	1.00E-07
PF00806.20	PUF	896	930	8.60E-12
PF00806.20	PUF	940	969	9.20E-07

Protein Sequence

>GWHPAAZE031190
MATESPVRIVESSRARKWASSKDVTPFASAFNVTDADESGFLLEGHEIYGDLRKVVPNRSGSAPPSVEGSFTTYGNLVVSSSLNSSLASSSSVLENCQSEEELLSDPSYFAYYCSNVNLNPRLPPPIVSRENRHLVCQIGGFGNNRKLTSFDDSGDGSLHWSKGSLSTHNEEPEDNYLAQQDSDDWAESANTLMIGHNAASSAGRCKSLVDSIQVDFPRTASPVCNLTQPQGHGTTEEPLNLDIEAISSNDLSMNVKKFLDSESSSLNDHVGKHSEGANACELIVNEDSLVALLPENSIPYVMGDSPPMQKVRLNCQDGGLQDDVVISGVAKSDASRNFLPVEDIKSEQDQQFYEKNVQQPCSPQSTCYQVEGSQSQLTAPRVNYMHNYGTKKFQHTFPSVEAQPVMRPLGIVPPPPLYAAASYMTSGNPLYPNLNPPALLYDPQYSPSGYALNSPFIAEYHSHAAFPMHFDASYGHGFNSHTAGVSTGESISHDVNDLQHWNQFYGHHRLMVQPPFPDPLHMQYFQRHPVEDAYVAPGQYGHLASAGLKVDQVYYFNSLKESSNIAADKSDQKFQTPPNGSLSIPSRGIAYYYGSTLGAVGAMTQFSASPFGRPMVVGTNHSGRRNEMRIPQGTIRNDGLYSGCQGQRGPDNFNDPKKCSFLEELKSSNSSRKFDLSDIAGRIVEFSVDQHGSRYIQQKLENCSIEHKRSVFKEVLPHASKLMTDVFGNYVIQKGNREQRNELADQLSGQMLTLSLQMYGCRVIQKALEVIEPDQKAELVHELDGHVMRCVRDQNGNHVIQKCIECIPTENIGFIISSFQGQVANLSTHPYGCRVIQRVLEHYSDEPEIQCIVDEILESSYLLAQDQYGNYVTQHVLERGNPHERSQIISMLTGKVVQMSQHKYASNVIEKCLEHCSTAEQELLIDEILNQPEESGSLLTMMKDQFANYVVQKILEISNDKQREVLLNWIRAHVHSLKKYTYGKHIVGRFEQLSGEGACFFYSVSPIVPYNLQFSIFFPSLLSVFLFFGL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.592
	SRR3591706	second leaf	1.794
	SRR3591707	mature leaf	1.441
	SRR3591708	Shoot apex	1.057
	SRR3591709	Stem	15.970
	SRR3591710	White floral bud	8.722
	SRR3591711	White flower	13.739
	SRR3591712	Green floral bud	3.979
	SRR3591713	Yellow flower	27.553
SRP173429	SRR8316895	Juvenile bud stage	5.282
	SRR8316896	Juvenile bud stage	7.115
	SRR8316897	Juvenile bud stage	2.941
	SRR8316894	Third green stage	2.633
	SRR8316900	Third green stage	3.758
	SRR8316901	Third green stage	3.719
	SRR8316898	Complete white stage	4.229
	SRR8316899	Complete white stage	5.727
	SRR8316903	Complete white stage	7.356
	SRR8316902	Silver flowering stage	15.924
	SRR8316904	Silver flowering stage	23.131
	SRR8316905	Silver flowering stage	13.696
	SRR8316906	Gold flowering stage	84.056
	SRR8316907	Gold flowering stage	64.224
	SRR8316908	Gold flowering stage	78.120
SRP132670	SRR6706286	Control	4.123
	SRR6706287	Light intensity 50%	4.326
	SRR6706288	Light intensity 20%	3.489
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.747
	CNS0095593	Slightly white alabastrum(diploid) 2	2.095
	CNS0095594	Slightly white alabastrum(diploid) 3	3.965
	CNS0095595	Whole white alabastrum(diploid) 2	2.778
	CNS0095596	Whole white alabastrum(diploid) 3	2.179
	CNS0095597	Whole white alabastrum(diploid) 4	3.019
	CNS0095598	Silvery flower (diploied) 1	7.584
	CNS0095599	Silvery flower (diploied) 2	6.533
	CNS0095600	Silvery flower (diploied) 3	21.739
	CNS0095601	Golden flower (diploid) 1	8.122
	CNS0095602	Golden flower (diploid) 2	25.020
	CNS0095603	Golden flower (diploid) 3	24.752
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.370
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.338
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.470
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.360
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.844
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.256
	CNS0095610	Silvery flower (tetraploid) 1	33.923
	CNS0095611	Silvery flower (tetraploid) 2	46.363
	CNS0095612	Silvery flower (tetraploid) 3	39.867
	CNS0095613	Golden flower (tetraploid) 1	30.362
	CNS0095614	Golden flower (tetraploid) 2	46.218
	CNS0095615	Golden flower (tetraploid) 3	125.869
CRA001975	CRR073297	Stem 1	7.877
	CRR073298	Stem 2	5.575
	CRR073299	Stem 3	6.787
	CRR073300	Leaf 1	1.692
	CRR073301	Leaf 2	1.521
	CRR073302	Leaf 3	1.413
	CRR073303	Juvenile bud 1	1.345
	CRR073304	Juvenile bud 2	1.494
	CRR073305	Juvenile bud 3	2.014
	CRR073306	Third green 1	1.939
	CRR073307	Third green 2	0.771
	CRR073308	Third green 3	1.183
	CRR073309	Second white 1	8.739
	CRR073310	Second white 2	15.141
	CRR073311	Second white 3	19.322
	CRR073312	Silver flowering 1	20.669
	CRR073313	Silver flowering 2	11.963
	CRR073314	Silver flowering 3	13.286
	CRR073315	Gold flowering 1	1.170
	CRR073316	Gold flowering 2	1.314
	CRR073317	Gold flowering 3	1.414
	CRR073318	Tawny withering 1	7.501
	CRR073319	Tawny withering 2	4.383
	CRR073320	Tawny withering 3	6.674