Gene detail

Detail information of GWHGAAZE031189

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011093461.1	0	PREDICTED: probable serine/threonine-protein kinase At4g35230 [Sesamum indicum]
COG	YP_284821.1	1E-13	protein kinase:GAF
Swissprot	tr\|Q944A7\|Y4523_ARATH	0	Probable serine/threonine-protein kinase At4g35230
trEMBL	tr\|A0A068UM76\|A0A068UM76_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313\|EMBL:CDP09344.1}
TAIR10	AT5G46570.1	0	BR-signaling kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	54689797	54699977	+
GWHAAZE00000009	mRNA	54689797	54699977	+
GWHAAZE00000009	exon	54689797	54689887	+
GWHAAZE00000009	exon	54690092	54690315	+
GWHAAZE00000009	exon	54691115	54691250	+
GWHAAZE00000009	exon	54692303	54692436	+
GWHAAZE00000009	exon	54693647	54693752	+
GWHAAZE00000009	exon	54694297	54694382	+
GWHAAZE00000009	exon	54698146	54698334	+
GWHAAZE00000009	exon	54698573	54698737	+
GWHAAZE00000009	exon	54699226	54699339	+
GWHAAZE00000009	exon	54699726	54699977	+
GWHAAZE00000009	CDS	54689797	54689887	+
GWHAAZE00000009	CDS	54690092	54690315	+
GWHAAZE00000009	CDS	54691115	54691250	+
GWHAAZE00000009	CDS	54692303	54692436	+
GWHAAZE00000009	CDS	54693647	54693752	+
GWHAAZE00000009	CDS	54694297	54694382	+
GWHAAZE00000009	CDS	54698146	54698334	+
GWHAAZE00000009	CDS	54698573	54698737	+
GWHAAZE00000009	CDS	54699226	54699339	+
GWHAAZE00000009	CDS	54699726	54699977	+

Transcript Sequence
>GWHTAAZE031223 ATGGGCTGTTTTCAGTCCAAAACCGCCAATGTTCAATCCCCTGACCAAGTCCCCTCTGATCAACCACCTCACCCCCCAAAATCAGATTTAGCTAATGGAGTTCAATTGGATGAAGAAGATCAAGTACCTAAATTCATGGAGTTTGATCTCACTGAGCTGAGAGCAGCAACAAATGGGTTCAGTGGTGAATTCATAGTGTCTGAGAGTGGAGAGAAAGCTCCCAATGTGGTTTATAAAGGGAAGCTTCGGAGCAATCGAGTCATCGCCATCAAGCGATTCTCCAAGCAATCTTGGCCCGACCCCCAACAGTTTGTGGCAGAGGCTGCTGGTGTTGGCAAGGTTCGGCATAAGAGATTGGTGAATCTAATTGGATGTTGTGCCGAGGGAGAAGAGCGTCTACTGGTGGCAGAATACATGCCAAATGATACACTTTCTAAGCATTTATTTCACTGGGATAAACAGCCTCTGCCTTGGGAAATGCGTGTGAGAGTTGCGTTCCATATTGCACAGGCTCTTGATCATTGCAATGTCGAAAATCGGAAAATCTATCATGATTTGAATGCATATCGAGTTCTTTTTGACGAGGATGGTGACCCCCGATTATCTAGTTTCGGTCTTATGAAAAACAGTCGCGATGGGAAGAGTTATAGCACCAATCTGGCTTATACTCCCCCCGAGTTTTTGCGCACAGGCAGGGTCATTCCAGAAAGTGTGGTCTACAGTTATGGAACTGTTCTGCTGGATCTTTTGAGTGGAAAGCATATCCCTCCAAGCCATGCTTTAGATTTGATAAGAGGGAAAAATGTGTTACTGCTGATGGACTCATCTTTGGAAGGGCAGTATGCAGATGCAGATGCAACTGCATTGGTTGAACTTGCTTCTAAATGTCTCCAGTACGAGGCTAGAGATCGACCCGATATCAAATTTCTTCTTACGGCAGTGGAACCCCTTCAGAAGCAGAAGGAGGTTTCATCACTTGTTCTAATGGGTCAGCCAAAAACTCCACCAGCAGTAGTGTTTCCAACAATGCTTTCTCCTCTTGGAAAGGCTTGTGCAAGGATGGACCTTACTGCAGTTCATGAAATTTTGCTTAAAACAGGCTACAGGGATGAAGAGGGTGCAGAGAATGAGCTATCATTCCAAGAGTGGACGCAACAAGTGCAAGATATGTTGAATACAAAGAAGTTTGGAGATGTTGCCTTTAGGGACAAGGATTTCAAAGGTGCAGTTGATTCTTATTCCAAGTTGGTTTCGATGATGTCTGTCCCTTCGGGCACCATCTTTGTGAGGCGAGCCCTATCCTACTTGATGCTTGGGCAGCCTGAACTTGCCTTAAGAGACGCAATGCAGGCTCAGGTGTGCTTGCCTGAGTGGCCCACCGCCTTCTACGTGCAGGCTCTTGCCCTCTCCAAGCTTGGAATGGAAACCGATGCCCAAGACATGCTTAATGATGGTGCCTCCTTTGAAGCCAAGAGGCAAAACAGCTGGCGCAACTAA

Network for GWHGAAZE031189

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	76	311	2.40E-27

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
K14500	BSK	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.418
	SRR3591706	second leaf	16.160
	SRR3591707	mature leaf	10.692
	SRR3591708	Shoot apex	41.909
	SRR3591709	Stem	25.962
	SRR3591710	White floral bud	22.257
	SRR3591711	White flower	14.610
	SRR3591712	Green floral bud	31.485
	SRR3591713	Yellow flower	2.038
SRP173429	SRR8316895	Juvenile bud stage	18.753
	SRR8316896	Juvenile bud stage	22.120
	SRR8316897	Juvenile bud stage	10.025
	SRR8316894	Third green stage	9.889
	SRR8316900	Third green stage	22.808
	SRR8316901	Third green stage	19.727
	SRR8316898	Complete white stage	15.811
	SRR8316899	Complete white stage	38.208
	SRR8316903	Complete white stage	26.318
	SRR8316902	Silver flowering stage	9.459
	SRR8316904	Silver flowering stage	12.188
	SRR8316905	Silver flowering stage	2.876
	SRR8316906	Gold flowering stage	7.957
	SRR8316907	Gold flowering stage	6.735
	SRR8316908	Gold flowering stage	8.117
SRP132670	SRR6706286	Control	21.471
	SRR6706287	Light intensity 50%	25.265
	SRR6706288	Light intensity 20%	22.171
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.501
	CNS0095593	Slightly white alabastrum(diploid) 2	17.505
	CNS0095594	Slightly white alabastrum(diploid) 3	14.314
	CNS0095595	Whole white alabastrum(diploid) 2	14.576
	CNS0095596	Whole white alabastrum(diploid) 3	9.376
	CNS0095597	Whole white alabastrum(diploid) 4	12.321
	CNS0095598	Silvery flower (diploied) 1	23.460
	CNS0095599	Silvery flower (diploied) 2	16.962
	CNS0095600	Silvery flower (diploied) 3	15.261
	CNS0095601	Golden flower (diploid) 1	17.585
	CNS0095602	Golden flower (diploid) 2	18.954
	CNS0095603	Golden flower (diploid) 3	16.710
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.727
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.141
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.907
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.552
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.149
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.506
	CNS0095610	Silvery flower (tetraploid) 1	12.089
	CNS0095611	Silvery flower (tetraploid) 2	14.841
	CNS0095612	Silvery flower (tetraploid) 3	11.853
	CNS0095613	Golden flower (tetraploid) 1	5.507
	CNS0095614	Golden flower (tetraploid) 2	8.918
	CNS0095615	Golden flower (tetraploid) 3	7.713
CRA001975	CRR073297	Stem 1	44.771
	CRR073298	Stem 2	45.651
	CRR073299	Stem 3	39.300
	CRR073300	Leaf 1	36.722
	CRR073301	Leaf 2	33.059
	CRR073302	Leaf 3	25.920
	CRR073303	Juvenile bud 1	28.605
	CRR073304	Juvenile bud 2	23.913
	CRR073305	Juvenile bud 3	37.711
	CRR073306	Third green 1	3.040
	CRR073307	Third green 2	3.181
	CRR073308	Third green 3	4.369
	CRR073309	Second white 1	2.605
	CRR073310	Second white 2	2.178
	CRR073311	Second white 3	1.518
	CRR073312	Silver flowering 1	0.882
	CRR073313	Silver flowering 2	0.557
	CRR073314	Silver flowering 3	1.172
	CRR073315	Gold flowering 1	8.227
	CRR073316	Gold flowering 2	16.245
	CRR073317	Gold flowering 3	12.949
	CRR073318	Tawny withering 1	19.741
	CRR073319	Tawny withering 2	12.575
	CRR073320	Tawny withering 3	14.230