Gene detail

Detail information of GWHGAAZE031194

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011085122.1	PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Sesamum indicum]
Swissprot	tr\|Q9C5Z1\|EIF3B_ARATH	Eukaryotic translation initiation factor 3 subunit B {ECO:0000255\|HAMAP-Rule:MF_03001}
trEMBL	tr\|D7SV75\|D7SV75_VITVI	Eukaryotic translation initiation factor 3 subunit B {ECO:0000256\|HAMAP-Rule:MF_03001, ECO:0000256\|PIRNR:PIRNR036424}
TAIR10	AT5G27640.1	translation initiation factor 3B1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	54784266	54792745	+
GWHAAZE00000009	mRNA	54784266	54792745	+
GWHAAZE00000009	exon	54784266	54784387	+
GWHAAZE00000009	exon	54784466	54784703	+
GWHAAZE00000009	exon	54786053	54786099	+
GWHAAZE00000009	exon	54786837	54786906	+
GWHAAZE00000009	exon	54787552	54787680	+
GWHAAZE00000009	exon	54787870	54787998	+
GWHAAZE00000009	exon	54788074	54788157	+
GWHAAZE00000009	exon	54788241	54788365	+
GWHAAZE00000009	exon	54788458	54788656	+
GWHAAZE00000009	exon	54789399	54789931	+
GWHAAZE00000009	exon	54791519	54791627	+
GWHAAZE00000009	exon	54792184	54792515	+
GWHAAZE00000009	exon	54792670	54792745	+
GWHAAZE00000009	CDS	54784266	54784387	+
GWHAAZE00000009	CDS	54784466	54784703	+
GWHAAZE00000009	CDS	54786053	54786099	+
GWHAAZE00000009	CDS	54786837	54786906	+
GWHAAZE00000009	CDS	54787552	54787680	+
GWHAAZE00000009	CDS	54787870	54787998	+
GWHAAZE00000009	CDS	54788074	54788157	+
GWHAAZE00000009	CDS	54788241	54788365	+
GWHAAZE00000009	CDS	54788458	54788656	+
GWHAAZE00000009	CDS	54789399	54789931	+
GWHAAZE00000009	CDS	54791519	54791627	+
GWHAAZE00000009	CDS	54792184	54792515	+
GWHAAZE00000009	CDS	54792670	54792745	+

Transcript Sequence
>GWHTAAZE031228 ATGGTGGAAGTGATTTCCATGGAGGAAATCAAACTTCGAGCTTCTCGACTCGGAGTCGATTTTTCGACGGTCGATTTGGACTCAATACGCCTTCCTCCGGGTGAAGATTTTGGCATTATAAGTGACGATGAAGACCTTAAGGAGGAGGAACGATTGGAATTTGAAAGCGGACATGGTAACATAATCGTTGTGGATAACCTACCGGTCGTTCCAAAGGAGAAGTTTGATAAATTAGAAACGGTTGTTCGTAAGATTTATAGCCAGATTGGTAAGATAACTGACGACGGCCTTTGGATGCCTGTTGATCCCGATACACAAAAAACCCTGGGTTACTGCTTTGTCGAATATAGTACTCCTCAGGAAGCTGAACTTGCCAAGGAGAAGACACATGGGTACAAGTTAGACAGGGTATTGGAAAGGTTCAGAGAATCAGCTGCCTTGAAAATTGAGCAAGTTTTGACTAAGCATCATCGTCAGGAGAACTTGCAACACTGGCTTACTGATGAGAAAGCTAGAGATCAGTTTGTTATTCGTTCTGGCTCGGATACTGAGGTTCTATGGAATGATCCTAGACAGTTGAAGGCTGAACCTGTTTACAAACGTCCTTTCTGGACCGAGAGTTTTGTGCAATGGTCTCCATTGGGGACCTACCTAGCCACTGTTCATAGGCAGGGTGCTGCTGTTTGGGGTGGTGCTTCTACCTTTAATCGCCTGATGCGATACGCTCATCCACAGGTTAAATTGATTGATTTTTCTCCTGGTGAGAGATTTTTGGTGACTTATAGCAGCCATGAACCAAGCAATCCCCGTGACAGTCACAGGGTTGTGCTAAATATATTTGATGTGAGAACTGGAAAAGTAATGAGGGATTTCAAAGGAAGCGCTGATGAGTTTGCAATTGGGGGAACTGGAGGGTTTACAGGGGTTTCTTGGCCTGTTTTCAGATGGGGTGGGGGAAAAGAAGATAAGTACTTTGCTAGAATGGGCAAAAATGTCATTTCCGTATATGAAACTGAGACCTTTACTCTTATTGACAAAAAGTCCATTAAAGTTGAAAATGTGATGGACTTTAGCTGGTCACCTACTGATCCCATTTTTGCTCTCTTTGTTCCTGAACTTGGTGGTGGGAACCAACCTGCAAGGGTGAGTCTAATCCAAATCCCAAGTAAAGAAGAGTTGAGGCAGAAGAATCTCTTCAGCGTTAGTGATTGCAAAATGTACTGGCAAAGCAATGGTGATTATCTTGCAGTTAAGGTTGACCGATACACAAAAACCAAGAAGAGCACATACACCGGCTTCGAGCTTTTCCGTATTAAAGAACGCGATATTCCCATTGAGGTTTTGGAGCTCGAGAACAAGAACGACAAGATCATAGCTTTTGCTTGGGAGCCAAAGGGTCATAGATTTGCAGTTATTCATGGTGATAGCCCGAGGCCCGATGTAAGTTTCTATTCGATGAAGAGCGGTACTAGCACAGGCCGAGTTTCGAAGCTTACAACCCTCAAGGGCAAGCAGGCGAATGCTCTTTATTGGTCCCCAACTGGCCGTTTCATTATTCTGGCTGGGCTTAAGGGCTTTAATGGACAGTTGGAGTTTTATAACGTTGATGAGCTTGAAACCATGGCAACTGCTGAGCATTTCATGGCGACAGATATTGAATGGGATCCTACGGGAAGGTATGTTGCAACCTCGGTTACTTCAGTACATGAGATGGAAAATGGGTTCAACATATGGTCCTTCAATGGAAAGCTCCTCTATCGGATACTAAAGGATCATTTCTTCCAGTTCTTGTGGCGCCCGAGACCACCATCCTTCTTGAGCCTAGAGAAAGAAGAGGAGATTGCCAAGAACCTAAAGAAGTACAGCAAAAAGTATGAAGCAGAGGACCAAGATGTGTCAATGCTATTAAGCGAGCAGGATCGCGAGAAGCGCAAAATGCTGAAGGACGAGTGGGAAAGGTGGGTGAGTGAGTGGAAGCGCATGCATGAAGAAGAGAAAACGGAGAGGCAGGGTCTTAGAGACGGAGAAGCAAGTGACGAGGAAGATGAGTATGAGTCGAAGGAAGTGGAGGTGGAGGAATTGTTGGATGTTTCCGAGGAAGTGCTTTCTTTTGAGGAAGAAGGAATTTTGCTGGTGATGCCTGCTTCAAACTATGATGCTTGTGTTGATGATCGGGCGTGTATTCCTGGTTAA

Network for GWHGAAZE031194

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	81	135	1.80E-06
PF08662.12	eIF2A	396	596	5.10E-66

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03253	EIF3B	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006413	biological_process	translational initiation
GO:0005852	cellular_component	eukaryotic translation initiation factor 3 complex
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding
GO:0003743	molecular_function	translation initiation factor activity
GO:0031369	molecular_function	translation initiation factor binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	98.885
	SRR3591706	second leaf	53.226
	SRR3591707	mature leaf	35.636
	SRR3591708	Shoot apex	92.975
	SRR3591709	Stem	57.620
	SRR3591710	White floral bud	87.941
	SRR3591711	White flower	111.713
	SRR3591712	Green floral bud	117.697
	SRR3591713	Yellow flower	87.131
SRP173429	SRR8316895	Juvenile bud stage	57.066
	SRR8316896	Juvenile bud stage	83.571
	SRR8316897	Juvenile bud stage	50.503
	SRR8316894	Third green stage	36.888
	SRR8316900	Third green stage	103.989
	SRR8316901	Third green stage	96.634
	SRR8316898	Complete white stage	25.567
	SRR8316899	Complete white stage	86.140
	SRR8316903	Complete white stage	51.966
	SRR8316902	Silver flowering stage	38.270
	SRR8316904	Silver flowering stage	54.890
	SRR8316905	Silver flowering stage	25.457
	SRR8316906	Gold flowering stage	79.703
	SRR8316907	Gold flowering stage	79.106
	SRR8316908	Gold flowering stage	99.370
SRP132670	SRR6706286	Control	97.585
	SRR6706287	Light intensity 50%	100.958
	SRR6706288	Light intensity 20%	105.506
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	68.241
	CNS0095593	Slightly white alabastrum(diploid) 2	69.821
	CNS0095594	Slightly white alabastrum(diploid) 3	65.616
	CNS0095595	Whole white alabastrum(diploid) 2	58.692
	CNS0095596	Whole white alabastrum(diploid) 3	62.288
	CNS0095597	Whole white alabastrum(diploid) 4	51.886
	CNS0095598	Silvery flower (diploied) 1	59.315
	CNS0095599	Silvery flower (diploied) 2	50.711
	CNS0095600	Silvery flower (diploied) 3	79.024
	CNS0095601	Golden flower (diploid) 1	45.643
	CNS0095602	Golden flower (diploid) 2	65.001
	CNS0095603	Golden flower (diploid) 3	65.352
	CNS0095604	Slightly white alabastrum(tetraploid) 1	81.673
	CNS0095605	Slightly white alabastrum(tetraploid) 2	72.629
	CNS0095606	Slightly white alabastrum(tetraploid) 3	133.830
	CNS0095607	Whole white alabastrum(tetraploid) 1	45.946
	CNS0095608	Whole white alabastrum(tetraploid) 2	47.136
	CNS0095609	Whole white alabastrum(tetraploid) 3	111.207
	CNS0095610	Silvery flower (tetraploid) 1	95.727
	CNS0095611	Silvery flower (tetraploid) 2	82.982
	CNS0095612	Silvery flower (tetraploid) 3	65.310
	CNS0095613	Golden flower (tetraploid) 1	58.249
	CNS0095614	Golden flower (tetraploid) 2	84.113
	CNS0095615	Golden flower (tetraploid) 3	62.754
CRA001975	CRR073297	Stem 1	87.845
	CRR073298	Stem 2	80.353
	CRR073299	Stem 3	87.173
	CRR073300	Leaf 1	83.087
	CRR073301	Leaf 2	85.225
	CRR073302	Leaf 3	68.986
	CRR073303	Juvenile bud 1	89.067
	CRR073304	Juvenile bud 2	64.094
	CRR073305	Juvenile bud 3	105.855
	CRR073306	Third green 1	30.667
	CRR073307	Third green 2	29.336
	CRR073308	Third green 3	33.093
	CRR073309	Second white 1	37.698
	CRR073310	Second white 2	41.181
	CRR073311	Second white 3	43.451
	CRR073312	Silver flowering 1	49.459
	CRR073313	Silver flowering 2	62.572
	CRR073314	Silver flowering 3	55.751
	CRR073315	Gold flowering 1	24.061
	CRR073316	Gold flowering 2	35.892
	CRR073317	Gold flowering 3	21.226
	CRR073318	Tawny withering 1	76.637
	CRR073319	Tawny withering 2	55.511
	CRR073320	Tawny withering 3	81.552