Gene detail

Detail information of GWHGAAZE031195

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010052747.1	3.3246E-120	PREDICTED: protein ECERIFERUM 1-like isoform X2 [Eucalyptus grandis]
COG	YP_008516259.1	0.0000001	fatty acid hydroxylase superfamily protein
Swissprot	tr\|F4HVY0\|CER1_ARATH	4E-102	Protein ECERIFERUM 1
trEMBL	tr\|A0A059CEC8\|A0A059CEC8_EUCGR	1E-120	Uncharacterized protein {ECO:0000313\|EMBL:KCW76818.1}
TAIR10	AT1G02205.2	7E-75	Fatty acid hydroxylase superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	54820887	54827352	+
GWHAAZE00000009	mRNA	54820887	54827352	+
GWHAAZE00000009	exon	54820887	54821116	+
GWHAAZE00000009	exon	54822269	54822501	+
GWHAAZE00000009	exon	54827129	54827352	+
GWHAAZE00000009	CDS	54820887	54821116	+
GWHAAZE00000009	CDS	54822269	54822501	+
GWHAAZE00000009	CDS	54827129	54827352	+

Transcript Sequence
>GWHTAAZE031229 ATGAAGTATGTGGTATTGGCCCCATGGGTGGTGCAAAGCATATACAATTTCACAACAAAGGATGAAAACGAGAGGGACTTGTCCAACTTTCTGATTTTCCCATTCCTGTTGTCAAGAATGCTCCACAATCAGATCTGGATTTCTCTCTCTAGATACAAAACTGCCAAGGGCAAGAACAGGATTGTTGACAAGAGCATTGAATTTGAACAAGTCGACAGAGAAAGAAGCTGGGATGACCAAATAATTTTCAATGGGACATTGTTCTATTTGGGAAATTTGACACTAAAAGGTGCTGCTCGCCTACCGATATGGAGAACAGATGGTATTATAATCACAATGTTACTTCATGTGGGAGTTGTGGAATTTCTTTATTATTGGCTTCACAGGGCATTGCATCACCATTACCTTTACTCTCGTTACCATTCTCATCACCACTCTTCTATTGTCACTGAACCCATTACTTCTGTCGTTCATCCATTTGCGGAACACATTTCGTACTTTGCACTTTTTGCAATACCGTTGCTGACTACGGTGCTAACGGGGACGGGGTCGGTGGCGTCGTTCGCAGGATACGTAACATTTATAGATTTCATGAACAATTTGGGTCATTGCAATTTCGAGCTAATTCCCAAATCCTTCTTCTCCATTTTCCCTCCTCTCAAGTACCTCATGTATACCCCTTCGTAA

Network for GWHGAAZE031195

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04116.14	FA_hydroxylase	114	212	1.30E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15404	K15404, CER1	Biosynthesis of secondary metabolites	map01110
K15404	K15404, CER1	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

GO term	Ontology	Name
GO:0008610	biological_process	lipid biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.442
	SRR3591706	second leaf	188.526
	SRR3591707	mature leaf	0.363
	SRR3591708	Shoot apex	208.300
	SRR3591709	Stem	4.524
	SRR3591710	White floral bud	263.204
	SRR3591711	White flower	89.161
	SRR3591712	Green floral bud	496.577
	SRR3591713	Yellow flower	130.255
SRP173429	SRR8316895	Juvenile bud stage	242.643
	SRR8316896	Juvenile bud stage	315.732
	SRR8316897	Juvenile bud stage	146.645
	SRR8316894	Third green stage	146.486
	SRR8316900	Third green stage	503.554
	SRR8316901	Third green stage	424.608
	SRR8316898	Complete white stage	55.525
	SRR8316899	Complete white stage	386.137
	SRR8316903	Complete white stage	92.258
	SRR8316902	Silver flowering stage	22.537
	SRR8316904	Silver flowering stage	43.226
	SRR8316905	Silver flowering stage	11.991
	SRR8316906	Gold flowering stage	23.294
	SRR8316907	Gold flowering stage	30.884
	SRR8316908	Gold flowering stage	23.976
SRP132670	SRR6706286	Control	717.577
	SRR6706287	Light intensity 50%	820.339
	SRR6706288	Light intensity 20%	932.698
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	70.142
	CNS0095593	Slightly white alabastrum(diploid) 2	61.388
	CNS0095594	Slightly white alabastrum(diploid) 3	64.146
	CNS0095595	Whole white alabastrum(diploid) 2	56.656
	CNS0095596	Whole white alabastrum(diploid) 3	41.747
	CNS0095597	Whole white alabastrum(diploid) 4	43.427
	CNS0095598	Silvery flower (diploied) 1	75.274
	CNS0095599	Silvery flower (diploied) 2	49.058
	CNS0095600	Silvery flower (diploied) 3	58.775
	CNS0095601	Golden flower (diploid) 1	31.720
	CNS0095602	Golden flower (diploid) 2	58.340
	CNS0095603	Golden flower (diploid) 3	54.548
	CNS0095604	Slightly white alabastrum(tetraploid) 1	177.849
	CNS0095605	Slightly white alabastrum(tetraploid) 2	99.933
	CNS0095606	Slightly white alabastrum(tetraploid) 3	896.363
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.420
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.265
	CNS0095609	Whole white alabastrum(tetraploid) 3	785.096
	CNS0095610	Silvery flower (tetraploid) 1	43.684
	CNS0095611	Silvery flower (tetraploid) 2	39.573
	CNS0095612	Silvery flower (tetraploid) 3	65.319
	CNS0095613	Golden flower (tetraploid) 1	57.425
	CNS0095614	Golden flower (tetraploid) 2	42.636
	CNS0095615	Golden flower (tetraploid) 3	28.497
CRA001975	CRR073297	Stem 1	457.092
	CRR073298	Stem 2	431.789
	CRR073299	Stem 3	374.612
	CRR073300	Leaf 1	569.794
	CRR073301	Leaf 2	486.288
	CRR073302	Leaf 3	589.228
	CRR073303	Juvenile bud 1	365.044
	CRR073304	Juvenile bud 2	232.721
	CRR073305	Juvenile bud 3	289.728
	CRR073306	Third green 1	56.424
	CRR073307	Third green 2	29.852
	CRR073308	Third green 3	48.051
	CRR073309	Second white 1	29.309
	CRR073310	Second white 2	44.951
	CRR073311	Second white 3	50.392
	CRR073312	Silver flowering 1	48.046
	CRR073313	Silver flowering 2	42.495
	CRR073314	Silver flowering 3	47.462
	CRR073315	Gold flowering 1	15.349
	CRR073316	Gold flowering 2	9.157
	CRR073317	Gold flowering 3	13.031
	CRR073318	Tawny withering 1	0.643
	CRR073319	Tawny withering 2	1.256
	CRR073320	Tawny withering 3	1.502