Detail information of GWHGAAZE031198


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009604492.13.2867E-119PREDICTED: UMP-CMP kinase 3 {ECO:0000255|HAMAP-Rule:MF_03172} isoform X2 [Nicotiana tomentosiformis]
COGNP_868424.12E-40uridylate kinase
Swissprottr|O04905|KCY3_ARATH1E-108UMP-CMP kinase 3 {ECO:0000255|HAMAP-Rule:MF_03172}
trEMBLtr|A0A022RIQ9|A0A022RIQ9_ERYGU3E-119UMP-CMP kinase {ECO:0000256|HAMAP-Rule:MF_03172}
TAIR10AT5G26667.12E-87P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5484672554849599-
GWHAAZE00000009mRNA5484672554849599-
GWHAAZE00000009exon5484959754849599-
GWHAAZE00000009exon5484913454849206-
GWHAAZE00000009exon5484877954848896-
GWHAAZE00000009exon5484768654847842-
GWHAAZE00000009exon5484747754847557-
GWHAAZE00000009exon5484723154847338-
GWHAAZE00000009exon5484672554846951-
GWHAAZE00000009CDS5484959754849599-
GWHAAZE00000009CDS5484913454849206-
GWHAAZE00000009CDS5484877954848896-
GWHAAZE00000009CDS5484768654847842-
GWHAAZE00000009CDS5484747754847557-
GWHAAZE00000009CDS5484723154847338-
GWHAAZE00000009CDS5484678454846951-
GWHAAZE00000009three_prime_UTR5484672554846783-
Transcript Sequence

Network for GWHGAAZE031198

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00406.23ADK241762.00E-48
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13800CMPK1, UMPK Metabolic pathways map01100
Pyrimidine metabolismmap00240
Drug metabolism - other enzymesmap00983

Gene Ontology

GO term OntologyName
GO:0006139biological_processnucleobase-containing compound metabolic process
GO:0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
GO:0006221biological_processpyrimidine nucleotide biosynthetic process
GO:0005524molecular_functionATP binding
GO:0019205molecular_functionnucleobase-containing compound kinase activity
GO:0004127molecular_functioncytidylate kinase activity
GO:0009041molecular_functionuridylate kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.736
SRR3591706second leaf11.517
SRR3591707mature leaf14.358
SRR3591708Shoot apex12.348
SRR3591709Stem24.964
SRR3591710White floral bud16.207
SRR3591711White flower15.619
SRR3591712Green floral bud16.172
SRR3591713Yellow flower17.314
SRP173429 SRR8316895Juvenile bud stage 12.000
SRR8316896Juvenile bud stage 17.766
SRR8316897Juvenile bud stage 4.488
SRR8316894Third green stage 7.309
SRR8316900Third green stage 19.722
SRR8316901Third green stage 22.586
SRR8316898Complete white stage 11.689
SRR8316899Complete white stage 31.600
SRR8316903Complete white stage 17.574
SRR8316902Silver flowering stage11.072
SRR8316904Silver flowering stage11.984
SRR8316905Silver flowering stage5.453
SRR8316906Gold flowering stage 16.765
SRR8316907Gold flowering stage 19.973
SRR8316908Gold flowering stage 18.158
SRP132670SRR6706286Control15.062
SRR6706287Light intensity 50%16.419
SRR6706288Light intensity 20%16.062
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.308
CNS0095593Slightly white alabastrum(diploid) 221.898
CNS0095594Slightly white alabastrum(diploid) 321.486
CNS0095595Whole white alabastrum(diploid) 223.201
CNS0095596Whole white alabastrum(diploid) 316.759
CNS0095597Whole white alabastrum(diploid) 417.935
CNS0095598Silvery flower (diploied) 117.736
CNS0095599Silvery flower (diploied) 216.404
CNS0095600Silvery flower (diploied) 312.425
CNS0095601Golden flower (diploid) 110.834
CNS0095602Golden flower (diploid) 29.529
CNS0095603Golden flower (diploid) 38.734
CNS0095604Slightly white alabastrum(tetraploid) 117.492
CNS0095605Slightly white alabastrum(tetraploid) 220.177
CNS0095606Slightly white alabastrum(tetraploid) 318.256
CNS0095607Whole white alabastrum(tetraploid) 116.855
CNS0095608Whole white alabastrum(tetraploid) 213.918
CNS0095609Whole white alabastrum(tetraploid) 310.358
CNS0095610Silvery flower (tetraploid) 110.850
CNS0095611Silvery flower (tetraploid) 210.051
CNS0095612Silvery flower (tetraploid) 315.324
CNS0095613Golden flower (tetraploid) 18.669
CNS0095614Golden flower (tetraploid) 29.959
CNS0095615Golden flower (tetraploid) 39.471
CRA001975CRR073297Stem 116.890
CRR073298Stem 215.604
CRR073299Stem 316.537
CRR073300Leaf 117.917
CRR073301Leaf 217.077
CRR073302Leaf 319.229
CRR073303Juvenile bud 122.955
CRR073304Juvenile bud 211.298
CRR073305Juvenile bud 316.090
CRR073306Third green 15.982
CRR073307Third green 216.338
CRR073308Third green 312.044
CRR073309Second white 18.971
CRR073310Second white 213.212
CRR073311Second white 38.374
CRR073312Silver flowering 19.692
CRR073313Silver flowering 29.835
CRR073314Silver flowering 35.357
CRR073315Gold flowering 113.212
CRR073316Gold flowering 212.900
CRR073317Gold flowering 311.332
CRR073318Tawny withering 140.811
CRR073319Tawny withering 280.245
CRR073320Tawny withering 344.040