Detail information of GWHGAAZE031209


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009603587.11.2493E-150PREDICTED: uncharacterized protein LOC104098539 [Nicotiana tomentosiformis]
Swissprottr|Q0WPW5|RMR4_ARATH1E-13Receptor homology region, transmembrane domain- and RING domain-containing protein 4 (Precursor)
trEMBLtr|K4AYQ4|K4AYQ4_SOLLC2E-144Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g088640.2.1}
TAIR10AT5G45290.12E-33RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5504192455047965-
GWHAAZE00000009mRNA5504192455047965-
GWHAAZE00000009exon5504192455042098-
GWHAAZE00000009exon5504222855042338-
GWHAAZE00000009exon5504309155043236-
GWHAAZE00000009exon5504474055044910-
GWHAAZE00000009exon5504561155046564-
GWHAAZE00000009exon5504782855047965-
GWHAAZE00000009CDS5504782855047965-
GWHAAZE00000009CDS5504561155046564-
GWHAAZE00000009CDS5504474055044910-
GWHAAZE00000009CDS5504309155043236-
GWHAAZE00000009CDS5504222855042338-
GWHAAZE00000009CDS5504192455042098-
Transcript Sequence

Network for GWHGAAZE031209

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_24705131.40E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf51.276
SRR3591706second leaf27.744
SRR3591707mature leaf54.294
SRR3591708Shoot apex30.685
SRR3591709Stem76.172
SRR3591710White floral bud54.422
SRR3591711White flower60.100
SRR3591712Green floral bud35.959
SRR3591713Yellow flower70.248
SRP173429 SRR8316895Juvenile bud stage 23.201
SRR8316896Juvenile bud stage 30.297
SRR8316897Juvenile bud stage 16.162
SRR8316894Third green stage 11.435
SRR8316900Third green stage 31.429
SRR8316901Third green stage 29.526
SRR8316898Complete white stage 20.300
SRR8316899Complete white stage 61.827
SRR8316903Complete white stage 33.263
SRR8316902Silver flowering stage21.260
SRR8316904Silver flowering stage27.653
SRR8316905Silver flowering stage13.438
SRR8316906Gold flowering stage 49.075
SRR8316907Gold flowering stage 45.874
SRR8316908Gold flowering stage 50.576
SRP132670SRR6706286Control39.680
SRR6706287Light intensity 50%38.044
SRR6706288Light intensity 20%39.284
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.157
CNS0095593Slightly white alabastrum(diploid) 227.056
CNS0095594Slightly white alabastrum(diploid) 325.185
CNS0095595Whole white alabastrum(diploid) 224.040
CNS0095596Whole white alabastrum(diploid) 319.014
CNS0095597Whole white alabastrum(diploid) 422.606
CNS0095598Silvery flower (diploied) 143.617
CNS0095599Silvery flower (diploied) 239.216
CNS0095600Silvery flower (diploied) 346.789
CNS0095601Golden flower (diploid) 149.917
CNS0095602Golden flower (diploid) 255.875
CNS0095603Golden flower (diploid) 352.279
CNS0095604Slightly white alabastrum(tetraploid) 120.124
CNS0095605Slightly white alabastrum(tetraploid) 219.194
CNS0095606Slightly white alabastrum(tetraploid) 328.985
CNS0095607Whole white alabastrum(tetraploid) 118.705
CNS0095608Whole white alabastrum(tetraploid) 215.444
CNS0095609Whole white alabastrum(tetraploid) 320.098
CNS0095610Silvery flower (tetraploid) 134.739
CNS0095611Silvery flower (tetraploid) 233.865
CNS0095612Silvery flower (tetraploid) 327.337
CNS0095613Golden flower (tetraploid) 126.298
CNS0095614Golden flower (tetraploid) 234.715
CNS0095615Golden flower (tetraploid) 365.603
CRA001975CRR073297Stem 152.843
CRR073298Stem 238.980
CRR073299Stem 354.291
CRR073300Leaf 139.945
CRR073301Leaf 244.304
CRR073302Leaf 345.083
CRR073303Juvenile bud 141.320
CRR073304Juvenile bud 235.558
CRR073305Juvenile bud 354.104
CRR073306Third green 132.129
CRR073307Third green 233.557
CRR073308Third green 331.628
CRR073309Second white 136.143
CRR073310Second white 236.338
CRR073311Second white 334.856
CRR073312Silver flowering 128.755
CRR073313Silver flowering 230.123
CRR073314Silver flowering 334.533
CRR073315Gold flowering 165.491
CRR073316Gold flowering 287.671
CRR073317Gold flowering 368.038
CRR073318Tawny withering 176.696
CRR073319Tawny withering 261.180
CRR073320Tawny withering 358.922