Gene detail

Detail information of GWHGAAZE031214

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP28894.1	0	hypothetical protein JCGZ_14665 [Jatropha curcas]
Swissprot	tr\|Q76E23\|IF4G_ARATH	0	Eukaryotic translation initiation factor 4G
trEMBL	tr\|A0A067KAP9\|A0A067KAP9_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP28894.1}
TAIR10	AT3G60240.4	2E-122	eukaryotic translation initiation factor 4G

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	55151381	55161553	+
GWHAAZE00000009	mRNA	55151381	55161553	+
GWHAAZE00000009	exon	55151381	55151525	+
GWHAAZE00000009	exon	55151790	55151936	+
GWHAAZE00000009	exon	55152153	55152220	+
GWHAAZE00000009	exon	55152363	55152419	+
GWHAAZE00000009	exon	55153199	55154662	+
GWHAAZE00000009	exon	55154937	55156618	+
GWHAAZE00000009	exon	55156932	55157846	+
GWHAAZE00000009	exon	55159934	55160128	+
GWHAAZE00000009	exon	55161223	55161553	+
GWHAAZE00000009	CDS	55151381	55151525	+
GWHAAZE00000009	CDS	55151790	55151936	+
GWHAAZE00000009	CDS	55152153	55152220	+
GWHAAZE00000009	CDS	55152363	55152419	+
GWHAAZE00000009	CDS	55153199	55154662	+
GWHAAZE00000009	CDS	55154937	55156618	+
GWHAAZE00000009	CDS	55156932	55157846	+
GWHAAZE00000009	CDS	55159934	55160128	+
GWHAAZE00000009	CDS	55161223	55161553	+

Transcript Sequence
>GWHTAAZE031248 ATGAGTTATGACAGCTTCAACAAGAAGTCCAATAATGCACAAGGAGGGCAATCTAGGGTTAGCAGTGCAAGTGTGAATTTAGATTCTAATACTGCTGCGGCTGCCCGTACTATACAGAATGGTGCCCATTCACAACCCTTACAAGGAGCAATGGATGCTCCAGTATCAGGTGTTACTGTGAAGCAGACTGATGTGCCGACTCAAAAAAGTACCCGGGGTGTTCCAAAGGTTCCATCTTCTAATACTGCTACGACCGGTTCTTATACCACAGTGCCGACAACCCCTGCAAAAGGAGATGCATCCAAGTCATTTCCTCTTCAATTTGGGTCCTTAAGTCCCGGTTTAATGAATGGAATGCAGATACCTGCTCGAACAAGCTCAGCGCCCCCAAATCTGGATGAGCAGAAACGTGACCAGGCTCGCAATGAATCATTAAGATCCACACCTCAACTGCCAACGCCAACTGTTCCCAAACAGCAGTTACCAAGGAAGGATGCAGTAACTTCCGACCAATCTACTACTGCTGTGTCTAAAGCAAAGAGGGACGTGCAAGTTTCATCTGCATCACCAGCAGCATCTCAACTTCAAAAGCCTTCAATGCATCCTCCTATAACCGGAATTTCTATGCAAATGCCTCCATTTCACCAGCCGCAAGCACCGCCTGTTCAATTTCCTGGACCTAGCCCACAAATGCAGTCTCAGTCCATGCCAATGCCCTTACCAAGAGGAAATCCATCTCAGCAGCAGGTATTTGTTCAAGGTCTTCAACCTCATCATCCAATGCAGTCTCAAGGGATTATGCATCAGGGACAGGGCTTGAACTTTTCATCTCAAATGGGTGCACCACTACCCCCTCAGCTGGGCAATGTGGGAATCAGCATTGCCCCACAATTTCAACAGCAGCAGCAGGCAGGAGGACAATTTGGGGGTCCTCGTAAAACCACCGTCAAGATTACTCACCCAGATACTCATGAAGAGTTAAGACTTGATAAACGGGGTGATCCATATATGGATGGCGGGTCATCAGGCCCCAGGCCTCACCCTACCTTGCCTTCTCAGTCCCAACCTAGTCCACCATTCCCATCTACACATCCAGTTAATTACTATCCCAATTCTTACAATGCCAGTCCCCTCTTTTTTCCAGCTAGTTCTCTTCCCCTAACTAGTTCTCAATTAACCACCAGTTCTCAGACACCAAGGTTTTATAACCAGGTTAGCCAGGGCCCACAATCTGTATCTTTCATTAACCAATCATCTCGTAACACGTTTCCCGTCGGTAAAACTGGTGCCCAATTGCATGGTATTGTTGAACCATCGAATTTGGAACGTACTCGTGATGTTCACAATATAATCTCGCCGCCTCTATCTACTCCAGTACAAGTGACGGTGAAACCTGCGTCTAGCTTGCATGGAGAAAAGGCTGCTTACTCAGCACTTCCTGTGAGCACCCCGGCTGTAATTATTTCTGAAAGCTCTTCGAAGCAGTTGAAATTTACGTCAATACCCCCAGTGACGGATACCCTGCCCGCCGCTTCCCCTGCTATTAAAGATTCTGTATCTGTTGTGACCAGTAGTACTGAAAGTACCAGTGTTAACAAGTTTGATTCCGTTAAAAGGGATTCTGAAGCTTTTTCTAAGAGCTCTTCGGAGCAGTTGAAGTCTATATTAGCACCTGTGGCAAGTAAACCATCTGTTTCTGCGGAGTTCCCATTGACAAACTCTTTACCCTCTGCCTCTCCTGATCTTACTGAGGTTTCGTCATCAGTTGCAGTTGCAAGTAATGTTGAGAGCTCAAAAAAGGAAATGGTTAATAGGCCGGACTATATTAAAGACGAACCGAAGAAGCCAGGCAAGGGAGGACAATCCCTATCTCAGAATGAGGATGGTGGACAGTCTACAATTGTTTCAAGCGTACCTTCTCCAGCTTTAGAACCCAGTAGTTCCTTCAATGGCAGCACTGGCACAATTGTAGAAGCTAAAACAAATGTTTCTGATTCAAAAAGTGATAGTACTGTGGAAAGCAAAGCATGTGAGCCAGCCAAAATTGATGTTGTGGAAACCCATGTTGATACAAGCCTGCAGAATGAACAACCAAAGCCTAAAATTTTGGGATCAAAAGAACAAGAAAGAGTTTCGTTGCCTGAAGAAACCAAAGAAAACGATTACAGTACTGAGATAACTCCTGAGTCTACATCAAAATCTTCAGAGGTCGATCAAACTGTCCAGGTCAATATTTTGGAAGGAATACCTACCATTGCTGCTGAATCCTTGGAAACTGCACAGAATAATCTGGAAGAACCTGTAGATTGTTCCAAAGAAAATGAAAATGTGGAAACTTCAGAAGCTTCTTCAAGTAGAGGTGATTGCATCAGTGGCGAAGAAGTTGCTGTTACAGAATCTGGTACATTGGATCAAGATTCTTCTCTTTCTGATGCGACCTTGAGAGATGAAGGGGAGGGTGGAGAAAGTAATAGTATGGAATTGCTTCCTTCTTCAGCATCGGGTAGCAAGGATAAGCCCTTGCTGGAGTCAAGTAGGGGAAAGGGTGCTACAGCTAGCACAAAGAAAAAGAGAAAAGAATTACTGCAAAAAGCTGATGCAGCTGGTACAACTTCCGATCTTTACAATGCGTACAAGGGCCCAGAGGACAAAAAAGACACAGTTTCCTCAGCGGAAAGCACAGAAAGCGTTATTTCAAAGCAGGTAACTGATGATGTTTCTCAAGAAGATTCATCAAATGAAAAAAGTGGTCAAAGCAAAGCTGAGCTGGATGATTGGGAAGATGCTGCAGACATTTCTACACCGAAATTGGAAACTTCAGATAAGGATGGAAATGCAGTAACGGATATGAAGTATTCTAGAGACTTCCTCCTGAAATTCTCTGATCAATTTACTGAGCTTCCAGAGAGTTTTAGGGTTACACCCGATATAGCTGAGATATTTTCTAACGTCAACATTCCTCGTGAATCGCACCCTAGTCCGGGAAGAAATTTTGACGGGCCAACAGGGGGACCTCGATTAGACCGACGTGGAAGTGGGTTGGTTGATGAAGACAAGTGGAATAGAATACCAGGCCCACTAGCTTTAGGAAGGGACATGCGGCTCGATGTTAACTATGGACAGGGTAATGTATTAGGGTTTCGACCTGGCCAAGGTGGGAGTTATGGTGTTCTACGAAACCACCCGCGTGCACAGACACCGGTCCACTACGCTGGGGGGATCCTATCAGGACCGATGCACTCCATGGGTCCCCAGGGAGGTATGCAACGGAATACATCTGATTCTGACCGGTGGCAGCGAGCAAAGGGTTTGATTCCTTCTCCTCAAACTCCGTTACAAGTGATGCACAAGGCTGAGAAGAAGTATGAAGTGGGTAAAATAACGGATGAGGAACAAGCTAAGCAAAGGCAGTTGAAAGGCATCTTAAACAAGCTTACTCCCCAAAACTTTGAAAAACTATTCGAGCAAGTCAAACAAGTCAACATCGATAATGCCGGGACCCTTACTGGTGTGATATCTCAAATATTTGATAAAGCTCTAATGGAACCGACTTTTTGTGAGATTATCAAACACCTGATGAAGAGGATGATTGATCATCCCAAAGCAAAAGAGCATATGGACGCATACTTTGATAGGATGATGAAGTTTTCGAACAACATGAAACTTTCTTCTAGAGTGAGGTTCATGTTGAAAGACGCAATTGACCTTAGAAAGAATAAATGGCAACAGAGGAGGAAAGTCGAAGGACCAAAGAAGATTGAAGAAGTGCATAGAGATGCAGCTCAAGAACGTCACGCACAAACTAGTAGGCTGTCTCGTGGTCCAAATATGAACCCTTTGGTTAGAAGGGGTGGGCAACCCATGGAATACGCTCCAAGAGGGTCAAACATGTTATCACCAAATGCTCAGATGGGTGTTTACCGTGGATTACCTCAACAGATGCGTGGTTACGGGAATCAAGACACTCGGTCTGATGATAGGCACTCTTTCGAGAGTAGAACTGTGTCCGTCACATTGCCCCAGAGACCCATTGGTGATGATTCTATTACCCTGGGGCCACAAGGCGGCCTTGCTAGGGGTATGTCTATTAGAGGACACCCATCAATGGCCAACGCACCCTTGGCTGATATGCCTGGTCCTGGAGACTCCAGAAGAATGAACCCTAGTTTGAATGGTTACAGTTTCTCGGAGCGGGCACCTTATGGCCAGAGAGAGGATCATGGACCGAGGTACAACCTGGAAAGATTTGGCGGTCCTGCTTATGACCAATCGACTACACAAGAGCGCAATGTCAATTATGTGAACAGGGATTTAAGGAATGCAGATCGTAGTTTTGATAGACCTTCAATGCCAACTTCACCACCCATGCAAAGTCGGGTCCCTATTTTAGCGCAAACTGCTCCTAGTCCTTCCGAAAAAGTTTGGCCAGAAGAACGTTTGCGAGACATGTCAATAGAAGCAATTAAAGAATTCTACAGTGCGAAAGATGAGAAGGAACTTGCTCTTTGCATCAAAGATTTGAATAACCCCAGCTTTTATCCATCAATGATATCTCTCTGGATCAATGACTCTTTTGAGAGGAAGGACATGGAGAGGGATCTGTTGGCCAAGCTTCTCATCAATCTTGCGAAACCTCGTGATGGCATATTAGCGCCAGATCACCTTATCAAAGGGTTTGAATCTGTTCTTGGTACATTGGAAGACATGGTAACTGATGCCCCAAAAGCAGCAGAGTTCCTTGGGCGCATTTTTGCCAAAATCTTAGTGGAAAATGTGGTTCCTATGAAAGAAATAGAGCGATTGATATATGAAGGTGGGGAGGAGCAAGGGCGGCTCGTGGAGATAGGGCTGGCTGCCGAAGTACTTGGAATCGTGCTCGAGATTATTGAATCAGAGAAAGGAGAATCCGTACTTAAGGAAATGCGTAGTGGGACAAGTTTGAGGCTAGAGAATTTCCAGCCTCCGGGTTCTAAGAAATCATGGAGGTTAGATAAGTTTATTTAG

Network for GWHGAAZE031214

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02854.20	MIF4G	1135	1196	2.90E-09
PF02847.18	MA3	1485	1593	1.70E-10

Protein Sequence

>GWHPAAZE031232
MSYDSFNKKSNNAQGGQSRVSSASVNLDSNTAAAARTIQNGAHSQPLQGAMDAPVSGVTVKQTDVPTQKSTRGVPKVPSSNTATTGSYTTVPTTPAKGDASKSFPLQFGSLSPGLMNGMQIPARTSSAPPNLDEQKRDQARNESLRSTPQLPTPTVPKQQLPRKDAVTSDQSTTAVSKAKRDVQVSSASPAASQLQKPSMHPPITGISMQMPPFHQPQAPPVQFPGPSPQMQSQSMPMPLPRGNPSQQQVFVQGLQPHHPMQSQGIMHQGQGLNFSSQMGAPLPPQLGNVGISIAPQFQQQQQAGGQFGGPRKTTVKITHPDTHEELRLDKRGDPYMDGGSSGPRPHPTLPSQSQPSPPFPSTHPVNYYPNSYNASPLFFPASSLPLTSSQLTTSSQTPRFYNQVSQGPQSVSFINQSSRNTFPVGKTGAQLHGIVEPSNLERTRDVHNIISPPLSTPVQVTVKPASSLHGEKAAYSALPVSTPAVIISESSSKQLKFTSIPPVTDTLPAASPAIKDSVSVVTSSTESTSVNKFDSVKRDSEAFSKSSSEQLKSILAPVASKPSVSAEFPLTNSLPSASPDLTEVSSSVAVASNVESSKKEMVNRPDYIKDEPKKPGKGGQSLSQNEDGGQSTIVSSVPSPALEPSSSFNGSTGTIVEAKTNVSDSKSDSTVESKACEPAKIDVVETHVDTSLQNEQPKPKILGSKEQERVSLPEETKENDYSTEITPESTSKSSEVDQTVQVNILEGIPTIAAESLETAQNNLEEPVDCSKENENVETSEASSSRGDCISGEEVAVTESGTLDQDSSLSDATLRDEGEGGESNSMELLPSSASGSKDKPLLESSRGKGATASTKKKRKELLQKADAAGTTSDLYNAYKGPEDKKDTVSSAESTESVISKQVTDDVSQEDSSNEKSGQSKAELDDWEDAADISTPKLETSDKDGNAVTDMKYSRDFLLKFSDQFTELPESFRVTPDIAEIFSNVNIPRESHPSPGRNFDGPTGGPRLDRRGSGLVDEDKWNRIPGPLALGRDMRLDVNYGQGNVLGFRPGQGGSYGVLRNHPRAQTPVHYAGGILSGPMHSMGPQGGMQRNTSDSDRWQRAKGLIPSPQTPLQVMHKAEKKYEVGKITDEEQAKQRQLKGILNKLTPQNFEKLFEQVKQVNIDNAGTLTGVISQIFDKALMEPTFCEIIKHLMKRMIDHPKAKEHMDAYFDRMMKFSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDAAQERHAQTSRLSRGPNMNPLVRRGGQPMEYAPRGSNMLSPNAQMGVYRGLPQQMRGYGNQDTRSDDRHSFESRTVSVTLPQRPIGDDSITLGPQGGLARGMSIRGHPSMANAPLADMPGPGDSRRMNPSLNGYSFSERAPYGQREDHGPRYNLERFGGPAYDQSTTQERNVNYVNRDLRNADRSFDRPSMPTSPPMQSRVPILAQTAPSPSEKVWPEERLRDMSIEAIKEFYSAKDEKELALCIKDLNNPSFYPSMISLWINDSFERKDMERDLLAKLLINLAKPRDGILAPDHLIKGFESVLGTLEDMVTDAPKAAEFLGRIFAKILVENVVPMKEIERLIYEGGEEQGRLVEIGLAAEVLGIVLEIIESEKGESVLKEMRSGTSLRLENFQPPGSKKSWRLDKFI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03260	EIF4G	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0003723	molecular_function	RNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.997
	SRR3591706	second leaf	25.483
	SRR3591707	mature leaf	24.776
	SRR3591708	Shoot apex	35.860
	SRR3591709	Stem	45.643
	SRR3591710	White floral bud	56.769
	SRR3591711	White flower	58.690
	SRR3591712	Green floral bud	49.964
	SRR3591713	Yellow flower	37.374
SRP173429	SRR8316895	Juvenile bud stage	34.756
	SRR8316896	Juvenile bud stage	51.420
	SRR8316897	Juvenile bud stage	23.458
	SRR8316894	Third green stage	26.503
	SRR8316900	Third green stage	53.700
	SRR8316901	Third green stage	51.549
	SRR8316898	Complete white stage	15.799
	SRR8316899	Complete white stage	47.133
	SRR8316903	Complete white stage	46.250
	SRR8316902	Silver flowering stage	23.192
	SRR8316904	Silver flowering stage	40.498
	SRR8316905	Silver flowering stage	16.414
	SRR8316906	Gold flowering stage	45.914
	SRR8316907	Gold flowering stage	50.509
	SRR8316908	Gold flowering stage	51.369
SRP132670	SRR6706286	Control	53.050
	SRR6706287	Light intensity 50%	53.249
	SRR6706288	Light intensity 20%	52.911
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.756
	CNS0095593	Slightly white alabastrum(diploid) 2	24.215
	CNS0095594	Slightly white alabastrum(diploid) 3	24.954
	CNS0095595	Whole white alabastrum(diploid) 2	23.564
	CNS0095596	Whole white alabastrum(diploid) 3	22.037
	CNS0095597	Whole white alabastrum(diploid) 4	23.264
	CNS0095598	Silvery flower (diploied) 1	26.344
	CNS0095599	Silvery flower (diploied) 2	24.240
	CNS0095600	Silvery flower (diploied) 3	75.259
	CNS0095601	Golden flower (diploid) 1	21.625
	CNS0095602	Golden flower (diploid) 2	64.635
	CNS0095603	Golden flower (diploid) 3	63.325
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.115
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.171
	CNS0095606	Slightly white alabastrum(tetraploid) 3	63.308
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.364
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.034
	CNS0095609	Whole white alabastrum(tetraploid) 3	47.362
	CNS0095610	Silvery flower (tetraploid) 1	67.821
	CNS0095611	Silvery flower (tetraploid) 2	64.381
	CNS0095612	Silvery flower (tetraploid) 3	64.723
	CNS0095613	Golden flower (tetraploid) 1	23.265
	CNS0095614	Golden flower (tetraploid) 2	48.304
	CNS0095615	Golden flower (tetraploid) 3	61.726
CRA001975	CRR073297	Stem 1	58.417
	CRR073298	Stem 2	49.524
	CRR073299	Stem 3	41.337
	CRR073300	Leaf 1	49.243
	CRR073301	Leaf 2	43.887
	CRR073302	Leaf 3	27.573
	CRR073303	Juvenile bud 1	32.758
	CRR073304	Juvenile bud 2	28.943
	CRR073305	Juvenile bud 3	56.086
	CRR073306	Third green 1	35.534
	CRR073307	Third green 2	24.245
	CRR073308	Third green 3	36.734
	CRR073309	Second white 1	19.579
	CRR073310	Second white 2	29.194
	CRR073311	Second white 3	34.826
	CRR073312	Silver flowering 1	27.444
	CRR073313	Silver flowering 2	30.729
	CRR073314	Silver flowering 3	29.391
	CRR073315	Gold flowering 1	12.641
	CRR073316	Gold flowering 2	28.273
	CRR073317	Gold flowering 3	12.952
	CRR073318	Tawny withering 1	31.970
	CRR073319	Tawny withering 2	22.540
	CRR073320	Tawny withering 3	26.514