Gene detail

Detail information of GWHGAAZE031219

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011093501.1	3.1538E-131	PREDICTED: rac-like GTP-binding protein 5 [Sesamum indicum]
COG	YP_003319433.1	1E-12	small GTP-binding protein
Swissprot	tr\|Q9XGU0\|RAC9_ARATH	6E-118	Rac-like GTP-binding protein ARAC9 (Precursor)
trEMBL	tr\|A0A059CEG2\|A0A059CEG2_EUCGR	3E-130	Uncharacterized protein {ECO:0000313\|EMBL:KCW76848.1}
TAIR10	AT2G44690.1	1E-92	Arabidopsis RAC-like 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	55230725	55235015	+
GWHAAZE00000009	mRNA	55230725	55235015	+
GWHAAZE00000009	exon	55230725	55230856	+
GWHAAZE00000009	exon	55230972	55231059	+
GWHAAZE00000009	exon	55232385	55232494	+
GWHAAZE00000009	exon	55232616	55232679	+
GWHAAZE00000009	exon	55233419	55233483	+
GWHAAZE00000009	exon	55233927	55233992	+
GWHAAZE00000009	exon	55234917	55235015	+
GWHAAZE00000009	CDS	55230725	55230856	+
GWHAAZE00000009	CDS	55230972	55231059	+
GWHAAZE00000009	CDS	55232385	55232494	+
GWHAAZE00000009	CDS	55232616	55232679	+
GWHAAZE00000009	CDS	55233419	55233483	+
GWHAAZE00000009	CDS	55233927	55233992	+
GWHAAZE00000009	CDS	55234917	55235015	+

Transcript Sequence
>GWHTAAZE031253 ATGAGTAGTACAAGTACAACAGCAACAACGACAGCAACAGCAACAAAGTTCATAAAATGTGTAACAGTTGGAGATGGAGCTGTGGGGAAGACTTGTCTTCTCATATCTTATACTAGCAACACTTTCCCAACTGATTATGTTCCAACTGTTTTTGATAATTTCAGTGCCAATGTTATTGTTGATGGACAGACTGTTAATTTGGGTCTCTGGGATACTGCTGGTCAAGAGGACTATAATAGACTGAGGCCTCTTAGTTACAGAGGTGCTGATGTTTTCATCCTTGCCTTTTCTCTCATAAGTAGGCCTAGTTTTGAGAATATTTCAAAGAAATGGGTCCCAGAGCTAAGACATTATGCCCCATCAGTGCCCATTGTTCTTGTGGGGACTAAACTAGATCTGAGAGAAAACAAGCAGTTCCTAATGGATTATCCAGGGGCTTGTACCATTTCTACGGAACAGGGGGAAGAGCTAAAGAAGCAAATAGGTGCTGTGGCATATTTGGAATGCAGCTCCAAGACACAACAGAATGTGAAAGCAGTGTTTGATGCTTCAATCAAGGTGGTTCTCCAGCCCCCAAAAACCAGGAAACAGAGGAAAAAACATAGACTCTGCCTCATACTTTAA

Network for GWHGAAZE031219

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	19	189	2.50E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04392	RAC1	Ras signaling pathway	map04014
		Rap1 signaling pathway	map04015
		MAPK signaling pathway	map04010
		MAPK signaling pathway - fly	map04013
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		PI3K-Akt signaling pathway	map04151
		Phagosome	map04145
		Focal adhesion	map04510
		Adherens junction	map04520
		Tight junction	map04530
		Regulation of actin cytoskeleton	map04810
		Toll-like receptor signaling pathway	map04620
		Natural killer cell mediated cytotoxicity	map04650
		B cell receptor signaling pathway	map04662
		Fc epsilon RI signaling pathway	map04664
		Fc gamma R-mediated phagocytosis	map04666
		Leukocyte transendothelial migration	map04670
		Chemokine signaling pathway	map04062
		Pancreatic secretion	map04972
		Neurotrophin signaling pathway	map04722
		Axon guidance	map04360
		Axon regeneration	map04361
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0007264	biological_process	small GTPase mediated signal transduction
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.819
	SRR3591706	second leaf	10.973
	SRR3591707	mature leaf	1.290
	SRR3591708	Shoot apex	33.282
	SRR3591709	Stem	30.590
	SRR3591710	White floral bud	8.646
	SRR3591711	White flower	1.614
	SRR3591712	Green floral bud	28.233
	SRR3591713	Yellow flower	0.781
SRP173429	SRR8316895	Juvenile bud stage	4.579
	SRR8316896	Juvenile bud stage	10.384
	SRR8316897	Juvenile bud stage	3.561
	SRR8316894	Third green stage	3.873
	SRR8316900	Third green stage	13.844
	SRR8316901	Third green stage	14.858
	SRR8316898	Complete white stage	4.557
	SRR8316899	Complete white stage	25.075
	SRR8316903	Complete white stage	4.705
	SRR8316902	Silver flowering stage	0.149
	SRR8316904	Silver flowering stage	0.520
	SRR8316905	Silver flowering stage	0.134
	SRR8316906	Gold flowering stage	0.786
	SRR8316907	Gold flowering stage	0.216
	SRR8316908	Gold flowering stage	0.385
SRP132670	SRR6706286	Control	1.781
	SRR6706287	Light intensity 50%	4.083
	SRR6706288	Light intensity 20%	4.391
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.932
	CNS0095593	Slightly white alabastrum(diploid) 2	10.941
	CNS0095594	Slightly white alabastrum(diploid) 3	8.075
	CNS0095595	Whole white alabastrum(diploid) 2	9.475
	CNS0095596	Whole white alabastrum(diploid) 3	7.657
	CNS0095597	Whole white alabastrum(diploid) 4	14.317
	CNS0095598	Silvery flower (diploied) 1	1.238
	CNS0095599	Silvery flower (diploied) 2	3.849
	CNS0095600	Silvery flower (diploied) 3	0.762
	CNS0095601	Golden flower (diploid) 1	1.053
	CNS0095602	Golden flower (diploid) 2	0.810
	CNS0095603	Golden flower (diploid) 3	0.458
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.863
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.313
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.288
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.669
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.452
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.018
	CNS0095610	Silvery flower (tetraploid) 1	0.603
	CNS0095611	Silvery flower (tetraploid) 2	0.431
	CNS0095612	Silvery flower (tetraploid) 3	0.641
	CNS0095613	Golden flower (tetraploid) 1	0.144
	CNS0095614	Golden flower (tetraploid) 2	0.465
	CNS0095615	Golden flower (tetraploid) 3	0.158
CRA001975	CRR073297	Stem 1	7.164
	CRR073298	Stem 2	10.725
	CRR073299	Stem 3	8.021
	CRR073300	Leaf 1	18.668
	CRR073301	Leaf 2	13.111
	CRR073302	Leaf 3	9.819
	CRR073303	Juvenile bud 1	18.415
	CRR073304	Juvenile bud 2	13.875
	CRR073305	Juvenile bud 3	16.671
	CRR073306	Third green 1	0.329
	CRR073307	Third green 2	0.939
	CRR073308	Third green 3	0.250
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.037
	CRR073316	Gold flowering 2	7.250
	CRR073317	Gold flowering 3	4.514
	CRR073318	Tawny withering 1	36.981
	CRR073319	Tawny withering 2	26.346
	CRR073320	Tawny withering 3	45.661