Detail information of GWHGAAZE031228


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009765385.12.4173E-153PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Nicotiana sylvestris]
Swissprottr|A8MR93|ALG12_ARATH5E-144Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
trEMBLtr|A0A061DVS4|A0A061DVS4_THECC2E-147Asparagine-linked glycosylation 12 isoform 2 {ECO:0000313|EMBL:EOX96512.1}
TAIR10AT1G02145.11E-110homolog of asparagine-linked glycosylation 12

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5540302555407842-
GWHAAZE00000009mRNA5540302555407842-
GWHAAZE00000009exon5540302555403160-
GWHAAZE00000009exon5540360855403676-
GWHAAZE00000009exon5540385055403917-
GWHAAZE00000009exon5540400755404093-
GWHAAZE00000009exon5540472055404791-
GWHAAZE00000009exon5540578655405889-
GWHAAZE00000009exon5540602655406089-
GWHAAZE00000009exon5540620955406280-
GWHAAZE00000009exon5540693155406989-
GWHAAZE00000009exon5540757155407708-
GWHAAZE00000009exon5540779155407842-
GWHAAZE00000009CDS5540779155407842-
GWHAAZE00000009CDS5540757155407708-
GWHAAZE00000009CDS5540693155406989-
GWHAAZE00000009CDS5540620955406280-
GWHAAZE00000009CDS5540602655406089-
GWHAAZE00000009CDS5540578655405889-
GWHAAZE00000009CDS5540472055404791-
GWHAAZE00000009CDS5540400755404093-
GWHAAZE00000009CDS5540385055403917-
GWHAAZE00000009CDS5540360855403676-
GWHAAZE00000009CDS5540302555403160-
Transcript Sequence

Network for GWHGAAZE031228

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03901.18Glyco_transf_22192605.90E-39
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03847ALG12 Metabolic pathways map01100
N-Glycan biosynthesismap00510
Various types of N-glycan biosynthesismap00513

Gene Ontology

GO term OntologyName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.663
SRR3591706second leaf6.708
SRR3591707mature leaf9.187
SRR3591708Shoot apex8.309
SRR3591709Stem12.854
SRR3591710White floral bud11.379
SRR3591711White flower10.619
SRR3591712Green floral bud12.696
SRR3591713Yellow flower7.488
SRP173429 SRR8316895Juvenile bud stage 8.425
SRR8316896Juvenile bud stage 12.804
SRR8316897Juvenile bud stage 6.866
SRR8316894Third green stage 5.879
SRR8316900Third green stage 15.402
SRR8316901Third green stage 12.069
SRR8316898Complete white stage 7.407
SRR8316899Complete white stage 15.751
SRR8316903Complete white stage 9.953
SRR8316902Silver flowering stage5.002
SRR8316904Silver flowering stage8.451
SRR8316905Silver flowering stage2.886
SRR8316906Gold flowering stage 8.590
SRR8316907Gold flowering stage 8.208
SRR8316908Gold flowering stage 9.165
SRP132670SRR6706286Control9.527
SRR6706287Light intensity 50%10.631
SRR6706288Light intensity 20%12.109
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.970
CNS0095593Slightly white alabastrum(diploid) 29.926
CNS0095594Slightly white alabastrum(diploid) 39.097
CNS0095595Whole white alabastrum(diploid) 210.315
CNS0095596Whole white alabastrum(diploid) 39.132
CNS0095597Whole white alabastrum(diploid) 49.799
CNS0095598Silvery flower (diploied) 19.899
CNS0095599Silvery flower (diploied) 29.559
CNS0095600Silvery flower (diploied) 311.321
CNS0095601Golden flower (diploid) 110.389
CNS0095602Golden flower (diploid) 28.627
CNS0095603Golden flower (diploid) 39.514
CNS0095604Slightly white alabastrum(tetraploid) 111.958
CNS0095605Slightly white alabastrum(tetraploid) 29.285
CNS0095606Slightly white alabastrum(tetraploid) 313.221
CNS0095607Whole white alabastrum(tetraploid) 19.709
CNS0095608Whole white alabastrum(tetraploid) 26.303
CNS0095609Whole white alabastrum(tetraploid) 39.575
CNS0095610Silvery flower (tetraploid) 19.657
CNS0095611Silvery flower (tetraploid) 29.861
CNS0095612Silvery flower (tetraploid) 37.483
CNS0095613Golden flower (tetraploid) 14.976
CNS0095614Golden flower (tetraploid) 26.962
CNS0095615Golden flower (tetraploid) 33.174
CRA001975CRR073297Stem 15.864
CRR073298Stem 25.657
CRR073299Stem 36.116
CRR073300Leaf 17.792
CRR073301Leaf 26.455
CRR073302Leaf 35.283
CRR073303Juvenile bud 15.107
CRR073304Juvenile bud 22.959
CRR073305Juvenile bud 35.559
CRR073306Third green 12.022
CRR073307Third green 21.926
CRR073308Third green 32.509
CRR073309Second white 13.378
CRR073310Second white 21.371
CRR073311Second white 31.379
CRR073312Silver flowering 11.802
CRR073313Silver flowering 21.336
CRR073314Silver flowering 32.489
CRR073315Gold flowering 13.451
CRR073316Gold flowering 25.247
CRR073317Gold flowering 32.748
CRR073318Tawny withering 13.893
CRR073319Tawny withering 25.002
CRR073320Tawny withering 37.402