Gene detail

Detail information of GWHGAAZE031238

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004239838.1	1.699E-113	PREDICTED: ras-related protein RABD2a [Solanum lycopersicum]
COG	YP_008431664.1	3E-21	hypothetical protein N186_01315
Swissprot	tr\|P40392\|RIC1_ORYSJ	1E-110	Ras-related protein RIC1
trEMBL	tr\|K4C273\|K4C273_SOLLC	6E-114	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc05g053940.2.1}
TAIR10	AT1G02130.1	7E-86	RAS 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	55572146	55574251	+
GWHAAZE00000009	mRNA	55572146	55574251	+
GWHAAZE00000009	exon	55572146	55572193	+
GWHAAZE00000009	exon	55572271	55572318	+
GWHAAZE00000009	exon	55572734	55572805	+
GWHAAZE00000009	exon	55572944	55573099	+
GWHAAZE00000009	exon	55573216	55573319	+
GWHAAZE00000009	exon	55573891	55574251	+
GWHAAZE00000009	CDS	55572146	55572193	+
GWHAAZE00000009	CDS	55572271	55572318	+
GWHAAZE00000009	CDS	55572734	55572805	+
GWHAAZE00000009	CDS	55572944	55573099	+
GWHAAZE00000009	CDS	55573216	55573319	+
GWHAAZE00000009	CDS	55573891	55573990	+
GWHAAZE00000009	three_prime_UTR	55573991	55574251	+

Transcript Sequence
>GWHTAAZE031272 GACGATTCATACTTGGAGAGTTACATAAGCACCATTGGAGTTGATTTTAAAATACGCACTGTGGAGCAAGATGGGAAAACCATTAAACTTCAAATTTGGGATACTGCTGGGCAAGAACGATTTAGGACAATTACTAGCAGCTACTACCGTGGTGCACATGGCATTATAGTGGTATATGATGTGACAGACCAAGAGAGCTTCAATAACGTGAAGCAGTGGCTTAGTGAAATTGACCGCTATGCAAGCGAGCATGTCAACAAACTTCTTGTTGGGAACAAGTGTGATCTCGCTTCTAGCAGAGTTGTGTCCTATGAAACAGGCAAGGCCTTTGCTGATGAAATTGGAATACCATTTATGGAAGCCAGTGCGAAAGATGCCACTAACGTGGAACAGGCCTTCATGGTCATGACTGGTGCAATCAAAGATAGGATGGCTAGCCAGCCGGCCCTGAACGCTGCTGCAAAGCCTCCAACGGTGAACATTCGCGGACAGCCTGTTGCACAGAGCGGTGGCTGCTGCTCTTCTTGAGCTTAAAATATTGGGAAGAACAAGTTTACAAGGCATATTCACTAGTCTCAAATGGCTTGTAGAAATATTCACCTTTGAAACCCGATTGATTTCATTACATTTGCTTTGTTTACATGTAGAAATTCATTACATTTGCTTTCTTTACATATAGAAAATCTGTTGGGATCCCATTCTTTCCGATGATATGTTTGATGTTGAAAAGTTGCTGTACAAATTTAAATGAATGATTGTCAATATTATTAGCATTGTTTTTCCCTGTTA

Network for GWHGAAZE031238

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	2	140	2.20E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07874	RAB1A	Autophagy - animal	map04140

Gene Ontology

GO term	Ontology	Name
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	97.914
	SRR3591706	second leaf	46.841
	SRR3591707	mature leaf	31.421
	SRR3591708	Shoot apex	47.520
	SRR3591709	Stem	97.170
	SRR3591710	White floral bud	141.341
	SRR3591711	White flower	115.214
	SRR3591712	Green floral bud	91.107
	SRR3591713	Yellow flower	123.558
SRP173429	SRR8316895	Juvenile bud stage	36.377
	SRR8316896	Juvenile bud stage	57.247
	SRR8316897	Juvenile bud stage	29.071
	SRR8316894	Third green stage	24.792
	SRR8316900	Third green stage	85.926
	SRR8316901	Third green stage	91.570
	SRR8316898	Complete white stage	90.764
	SRR8316899	Complete white stage	119.588
	SRR8316903	Complete white stage	107.561
	SRR8316902	Silver flowering stage	98.054
	SRR8316904	Silver flowering stage	120.080
	SRR8316905	Silver flowering stage	66.945
	SRR8316906	Gold flowering stage	243.099
	SRR8316907	Gold flowering stage	223.146
	SRR8316908	Gold flowering stage	201.703
SRP132670	SRR6706286	Control	43.678
	SRR6706287	Light intensity 50%	53.951
	SRR6706288	Light intensity 20%	55.166
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	83.094
	CNS0095593	Slightly white alabastrum(diploid) 2	92.562
	CNS0095594	Slightly white alabastrum(diploid) 3	85.395
	CNS0095595	Whole white alabastrum(diploid) 2	100.282
	CNS0095596	Whole white alabastrum(diploid) 3	104.117
	CNS0095597	Whole white alabastrum(diploid) 4	101.461
	CNS0095598	Silvery flower (diploied) 1	55.617
	CNS0095599	Silvery flower (diploied) 2	70.110
	CNS0095600	Silvery flower (diploied) 3	97.758
	CNS0095601	Golden flower (diploid) 1	53.643
	CNS0095602	Golden flower (diploid) 2	93.445
	CNS0095603	Golden flower (diploid) 3	85.123
	CNS0095604	Slightly white alabastrum(tetraploid) 1	89.126
	CNS0095605	Slightly white alabastrum(tetraploid) 2	79.709
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.335
	CNS0095607	Whole white alabastrum(tetraploid) 1	91.683
	CNS0095608	Whole white alabastrum(tetraploid) 2	99.016
	CNS0095609	Whole white alabastrum(tetraploid) 3	80.669
	CNS0095610	Silvery flower (tetraploid) 1	84.677
	CNS0095611	Silvery flower (tetraploid) 2	72.617
	CNS0095612	Silvery flower (tetraploid) 3	191.069
	CNS0095613	Golden flower (tetraploid) 1	119.439
	CNS0095614	Golden flower (tetraploid) 2	81.275
	CNS0095615	Golden flower (tetraploid) 3	167.723
CRA001975	CRR073297	Stem 1	49.497
	CRR073298	Stem 2	45.418
	CRR073299	Stem 3	42.536
	CRR073300	Leaf 1	71.213
	CRR073301	Leaf 2	74.633
	CRR073302	Leaf 3	65.001
	CRR073303	Juvenile bud 1	85.045
	CRR073304	Juvenile bud 2	98.572
	CRR073305	Juvenile bud 3	55.166
	CRR073306	Third green 1	265.255
	CRR073307	Third green 2	274.868
	CRR073308	Third green 3	234.686
	CRR073309	Second white 1	215.060
	CRR073310	Second white 2	222.137
	CRR073311	Second white 3	153.448
	CRR073312	Silver flowering 1	150.303
	CRR073313	Silver flowering 2	171.544
	CRR073314	Silver flowering 3	113.968
	CRR073315	Gold flowering 1	37.417
	CRR073316	Gold flowering 2	41.827
	CRR073317	Gold flowering 3	32.450
	CRR073318	Tawny withering 1	73.214
	CRR073319	Tawny withering 2	77.720
	CRR073320	Tawny withering 3	95.831