Gene detail

Detail information of GWHGAAZE031249

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006375124.1	H+-ATPase family protein [Populus trichocarpa]
COG	YP_006722443.1	cation-translocating P-type ATPase
Swissprot	tr\|Q9LV11\|PMA11_ARATH	ATPase 11, plasma membrane-type
trEMBL	tr\|U5FSH1\|U5FSH1_POPTR	H+-ATPase family protein {ECO:0000313\|EMBL:ERP52921.1}
TAIR10	AT5G62670.1	H(+)-ATPase 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	55840353	55849439	+
GWHAAZE00000009	mRNA	55840353	55849439	+
GWHAAZE00000009	exon	55840353	55840406	+
GWHAAZE00000009	exon	55840795	55840845	+
GWHAAZE00000009	exon	55841023	55841121	+
GWHAAZE00000009	exon	55841512	55841649	+
GWHAAZE00000009	exon	55841782	55841916	+
GWHAAZE00000009	exon	55842422	55842601	+
GWHAAZE00000009	exon	55842705	55842911	+
GWHAAZE00000009	exon	55843049	55843168	+
GWHAAZE00000009	exon	55843277	55843396	+
GWHAAZE00000009	exon	55843712	55843834	+
GWHAAZE00000009	exon	55843923	55844027	+
GWHAAZE00000009	exon	55844115	55844259	+
GWHAAZE00000009	exon	55844682	55844846	+
GWHAAZE00000009	exon	55844931	55845169	+
GWHAAZE00000009	exon	55845695	55845727	+
GWHAAZE00000009	exon	55845840	55845921	+
GWHAAZE00000009	exon	55846030	55846190	+
GWHAAZE00000009	exon	55846786	55846998	+
GWHAAZE00000009	exon	55847705	55847887	+
GWHAAZE00000009	exon	55848425	55848603	+
GWHAAZE00000009	exon	55849267	55849439	+
GWHAAZE00000009	CDS	55840353	55840406	+
GWHAAZE00000009	CDS	55840795	55840845	+
GWHAAZE00000009	CDS	55841023	55841121	+
GWHAAZE00000009	CDS	55841512	55841649	+
GWHAAZE00000009	CDS	55841782	55841916	+
GWHAAZE00000009	CDS	55842422	55842601	+
GWHAAZE00000009	CDS	55842705	55842911	+
GWHAAZE00000009	CDS	55843049	55843168	+
GWHAAZE00000009	CDS	55843277	55843396	+
GWHAAZE00000009	CDS	55843712	55843834	+
GWHAAZE00000009	CDS	55843923	55844027	+
GWHAAZE00000009	CDS	55844115	55844259	+
GWHAAZE00000009	CDS	55844682	55844846	+
GWHAAZE00000009	CDS	55844931	55845169	+
GWHAAZE00000009	CDS	55845695	55845727	+
GWHAAZE00000009	CDS	55845840	55845921	+
GWHAAZE00000009	CDS	55846030	55846190	+
GWHAAZE00000009	CDS	55846786	55846998	+
GWHAAZE00000009	CDS	55847705	55847887	+
GWHAAZE00000009	CDS	55848425	55848603	+
GWHAAZE00000009	CDS	55849267	55849363	+
GWHAAZE00000009	three_prime_UTR	55849364	55849439	+

Transcript Sequence
>GWHTAAZE031283 ATGGATGATAAGTCATTTGCCCTTGATGCTGTAAACAAGGAAGCTGTTGATCTGGAGAACGTGCCCCTAGAAGAAGTTTTTGAACATCTTAAATGTACAAGAGAGGAAAATAAATTATATAAGTTTTTGGGCTTTATGTGGAATCCTCTGTCATGGGTGATGGAAGCAGCAGCTATAATGGCCATAGCTCTTGCAAACGGAGGGGGTAAGGGGCCAGATTACCAGGATTTTGTTGGAATCGTGGTCTTACTTGTTATCAATTCCACTATCAGTTTCATCGAGGAAAATAATGCAGGCAATGCTGCTGCTGCTCTTATGGCTCGGTTGGCTCCAAAAGCAAAGGTCTTACGTGATGGAAAATGGAGTGAGGAAGATGCTTCAGTGTTAGTTCCTGGTGATATTGTCAGTATCAAACTAGGTGACATTATTCCAGCTGATGCACGTCTTCTTGAAGGAGATCCCTTAAAGATTGACCAGTCTGCTCTAACTGGAGAATCACTTCCAGTAACCAAGCATCCTGGTGATGGGGTATACTCAGGTTCAACATGCAAGCAAGGGGAAATTGAAGCAGTGGTTATTGCTACTGGAGTTCATACTTTCTTTGGAAAAGCAGCTCATCTTGTGGAGAATACCACACATGTTGGGCATTTCCAGCAGGTTTTAACGGCAATTGGAAACTTCTGCATTTGCTCAATTGCTATTGGTATGGCAATCGAGATCGTTGTTATATGGGGGATTCAAGGAAGGAAATATCGTACTGGAATAGATAACCTTCTTGTGCTACTCATTGGTGGAATTCCTATTGCAATGCCCACTGTTCTCTCTGTTACCATGGCCATTGGTTCGCATCGCTTATCTCAGCAGGGAGCCATAACAAAAAGAATGACAGCCATAGAGGAAATGGCTGGGATGGATGTATTATGCAGTGATAAAACAGGCACCCTAACACTCAACAAGCTTACCGTCGACAAAAATATGATTGAGGTTTTTGCCAAAGGTGTTGACCAAGATGCTGTTGTACTGATGGCTGCAAGAGCATCAAGGTTAGAGAATCAAGATGCAATTGATGCTGCAATTGTTGCAATGCTAGGAGATCCGAAGGAGGCACGTGCTGGAATTACAGAGATTCACTTCCTCCCATTCAATCCAACTGACAAAAGGACAGCACTTACATACACAGACAAAGCTGGTCAAATGCATAGAGTGAGCAAAGGGGCACCAGAGCAGATTCTCAGTCTAGCACATAACCGATCAGAAATTGAAAAGAGGGCCCACGCAATAATTGACAAGTTCGCAGAACGCGGGCTCCGTTCACTTGGAGTTGCTCGACAGGAAGTACCTGCTGGAACCAAAGACAGTCCTGGTGGGCCCTGGGAATTCGTTGGCCTTCTCCCTCTCTTTGATCCTCCTCGTCATGATAGTGCTGAAACAATAAGGAGAGCTCTAGATCTTGGAGTCAGTGTTAAGATGATCACAGGTGACCAACTTGCGATTGCTAAGGAAACAGGAAGAAGGCTTGGAATGGGAACAAATATGTACCCGTCTTCATCTTTGCTTGGTGACAGCAAGGATGAGGCATCTTCAGCTCTACCAATTGATGAATTGATTGAGAAAGCTGATGGATTTGCAGGCGTTTTCCCTGAACATAAGTATGAGATTGTAAGGAAACTACAAGGAAGAAAACACATATGTGGAATGACCGGTGATGGTGTAAATGACGCGCCCGCCTTAAAGAAAGCTGACATTGGAATTGCAGTGGCAGATTCTACAGATGCTGCTCGCAGTGCTTCTGATATTGTTCTAACAGAACCGGGGTTGAGTGTAATTATTAGTGCTGTCTTAACGAGTCGTGCAATCTTCCAAAGAATGAAAAACTACACGATATATGCCGTCTCTATCACTATACGTATTGTGCTAGGTTTCATGTTGCTGACTGTATTCTGGAAATTTAACTTCCCTCCCTTCATGGTTCTTGTTATTGCCATTCTTAATGATGGTACAATTATGACGATATCGAAAGACAGGGTCAAACCTTCTCCAATTCCGGACAGTTGGAAGCTCAGTGAAATTTTTGCAACTGGGGTTGTGCTTGGTGCTTACATGTCTTTAATGACAGTTATATTCTTCTGGGCTGCGTATGACACTAACTTCTTTAAGAAAACATTTGGTACAAGTGACTTGAATCATTACCACTTTAATATGACAAATGAAACTGAGGGCAAGCCAATCAATGAAAAGATGGCATCTGCTGTATACCTTCAAGTGAGCACCATCAGCCAGGCCTTAATATTTGTGACCCGTTCTAGGGGCTGGTCTTTCACAGAAAGACCTGGACTTCTTCTCGTTACAGCCTTTATCCTTGCTCAACTGGTTGCAACTGTTATATCAGCCGAGCTAACATGGGGGGTTGCTGGAATTAGAAAGATAGGCTGGAGGTGGACTGGTGTTATATGGTTGTACAATTTATTGAATTACATGCTACTTGATCCTATCAAATTTGCAGTTCAATATGCTCTTAGTGGTAGAGCCTGGGGCTTGGTTGTTGATAAAAGAACTGCATTCACTACGGCAAAGGACTTTGGAAGGGAAGCACGTGAGGCTGCATGGGCAACTGAGCAGCGAACACTGCATGGCCTCCAGTCCGTGGAGCCAAAGCTGTTTACTGAGCGTGGCACGTTTAGGGATATTAATCTTATGGCAGAAGAAGCTAAAAGACGCGCAGAAATTGCAAGGCTAAGGGAGCTTCACACACTAAAAGGGAAGGTGGAGTCATTTGCCAAGTTGAGGGGTTTGGATATCGATGCCATGAACCACCACTACACTGTCTGAATTCCCCTCTTTTTGTTCTTAACGATCTTTTTCTCCTTTAGTTTTTGTTTTTTCAGTTGTGATTTTATTGTTCGAT

Network for GWHGAAZE031249

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00122.21	E1-E2_ATPase	109	287	2.20E-50
PF00702.27	Hydrolase	304	581	1.60E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01535	PMA1, PMA2	Metabolic pathways	map01100
K01535	PMA1, PMA2	Oxidative phosphorylation	map00190

Gene Ontology

GO term	Ontology	Name
GO:0120029	biological_process	proton export across plasma membrane
GO:0016021	cellular_component	integral component of membrane
GO:0008553	molecular_function	proton-exporting ATPase activity, phosphorylative mechanism
GO:0000166	molecular_function	nucleotide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.177
	SRR3591706	second leaf	0.091
	SRR3591707	mature leaf	0.336
	SRR3591708	Shoot apex	1.107
	SRR3591709	Stem	0.195
	SRR3591710	White floral bud	0.561
	SRR3591711	White flower	0.080
	SRR3591712	Green floral bud	0.812
	SRR3591713	Yellow flower	0.033
SRP173429	SRR8316895	Juvenile bud stage	0.379
	SRR8316896	Juvenile bud stage	0.752
	SRR8316897	Juvenile bud stage	0.286
	SRR8316894	Third green stage	0.446
	SRR8316900	Third green stage	0.502
	SRR8316901	Third green stage	0.859
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.181
	SRR8316903	Complete white stage	0.238
	SRR8316902	Silver flowering stage	0.169
	SRR8316904	Silver flowering stage	0.152
	SRR8316905	Silver flowering stage	0.096
	SRR8316906	Gold flowering stage	0.324
	SRR8316907	Gold flowering stage	0.111
	SRR8316908	Gold flowering stage	0.245
SRP132670	SRR6706286	Control	0.464
	SRR6706287	Light intensity 50%	0.629
	SRR6706288	Light intensity 20%	0.676
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.914
	CNS0095593	Slightly white alabastrum(diploid) 2	1.097
	CNS0095594	Slightly white alabastrum(diploid) 3	0.984
	CNS0095595	Whole white alabastrum(diploid) 2	1.645
	CNS0095596	Whole white alabastrum(diploid) 3	1.266
	CNS0095597	Whole white alabastrum(diploid) 4	0.974
	CNS0095598	Silvery flower (diploied) 1	0.169
	CNS0095599	Silvery flower (diploied) 2	0.636
	CNS0095600	Silvery flower (diploied) 3	0.241
	CNS0095601	Golden flower (diploid) 1	0.176
	CNS0095602	Golden flower (diploid) 2	0.266
	CNS0095603	Golden flower (diploid) 3	0.212
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.696
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.566
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.497
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.949
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.070
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.631
	CNS0095610	Silvery flower (tetraploid) 1	0.062
	CNS0095611	Silvery flower (tetraploid) 2	0.129
	CNS0095612	Silvery flower (tetraploid) 3	0.096
	CNS0095613	Golden flower (tetraploid) 1	0.007
	CNS0095614	Golden flower (tetraploid) 2	0.043
	CNS0095615	Golden flower (tetraploid) 3	0.036
CRA001975	CRR073297	Stem 1	0.661
	CRR073298	Stem 2	0.426
	CRR073299	Stem 3	0.379
	CRR073300	Leaf 1	0.444
	CRR073301	Leaf 2	0.662
	CRR073302	Leaf 3	0.250
	CRR073303	Juvenile bud 1	0.081
	CRR073304	Juvenile bud 2	0.060
	CRR073305	Juvenile bud 3	0.093
	CRR073306	Third green 1	0.203
	CRR073307	Third green 2	0.090
	CRR073308	Third green 3	0.230
	CRR073309	Second white 1	0.149
	CRR073310	Second white 2	0.221
	CRR073311	Second white 3	0.560
	CRR073312	Silver flowering 1	0.282
	CRR073313	Silver flowering 2	0.277
	CRR073314	Silver flowering 3	0.069
	CRR073315	Gold flowering 1	0.134
	CRR073316	Gold flowering 2	0.121
	CRR073317	Gold flowering 3	0.053
	CRR073318	Tawny withering 1	0.375
	CRR073319	Tawny withering 2	0.661
	CRR073320	Tawny withering 3	0.247