Gene detail

Detail information of GWHGAAZE031253

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP09459.1	1.5708E-116	unnamed protein product [Coffea canephora]
Swissprot	tr\|A2WW87\|GAM1_ORYSI	2E-38	Transcription factor GAMYB
trEMBL	tr\|A0A068UMH9\|A0A068UMH9_COFCA	6E-117	Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313\|EMBL:CDP09459.1}
TAIR10	AT3G60460.1	2E-58	myb-like HTH transcriptional regulator family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	55903946	55906014	-
GWHAAZE00000009	mRNA	55903946	55906014	-
GWHAAZE00000009	exon	55903946	55904069	-
GWHAAZE00000009	exon	55904165	55904445	-
GWHAAZE00000009	exon	55905061	55905310	-
GWHAAZE00000009	exon	55905809	55906014	-
GWHAAZE00000009	CDS	55905809	55906014	-
GWHAAZE00000009	CDS	55905061	55905310	-
GWHAAZE00000009	CDS	55904165	55904445	-
GWHAAZE00000009	CDS	55903946	55904069	-

Transcript Sequence
>GWHTAAZE031287 ATGGAAGGGAGGAGACGGGTATATGATGAAATGGGAGAGATAAAGAAAGGGCCATGGAAAGCAGAGGAGGATGAAGTTTTGATCAATCATGTCAAGAAATACGGCCCAAGAGATTGGAGCTCCATTCGATCCAAAGGACTCTTGCAGCGTACCGGAAAGTCTTGCCGCCTCCGTTGGGTTAATAAACTCCACCCTAATTTGAAGAACGGAGTGAAGTTCTCGGCGGAGGAGGAGAGGACAGTGATAGAGTTGCAAGCACAGTTTGGGAACAAATGGGCGAGAATCGCTACATATTTGCCCGGAAGGACTGATAATGATGTGAAGAATTTTTGGAGTAGCAGACAGAAGAGATTGGCTAGGATTTTGCAAACACCAGCAGCACCATCAACCACCAAGTCACACAAGTACAATAATGGTGAAGAAGTCCCTTCTCTTCATGATATTCCCGCTTTGGAGGCACCAAAGTTCAGCTCTTTGATCGAGGAAGAATCATCCTTCAAGGCACAACCTTGTTCATCGTCCACCTACATTGACAACCCTGAGCCAATCAGGAAGGTTCCATTACCCGAACTACTAAACCCTAACTTGGTCGCATTCGAACAAAACCTCCTTCAACTAGACTTCATCCCTATCGAGAAGAAACCCTACATTGATCACTCACCACCACCACATTCCACCTTCCCCCAACTCGAGCTGGAGCTTCCTCTTGGACTCGAGAGCCAAGAACTAGAAACTCGGAGATATGTTAATGGTGGGAGTGGGGAGAATGAGAAACCGGTGACCCCGGATAGCTTCATTGATGACTTTCCGATGGACATATTTGATCAAATCGAAACACTTCCAAGCCCTTTGGATTGGTGA

Network for GWHGAAZE031253

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	16	61	7.10E-12
PF00249.32	Myb_DNA-binding	72	111	1.20E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.242
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.097
	SRR3591708	Shoot apex	0.043
	SRR3591709	Stem	0.493
	SRR3591710	White floral bud	1.154
	SRR3591711	White flower	0.182
	SRR3591712	Green floral bud	3.675
	SRR3591713	Yellow flower	0.213
SRP173429	SRR8316895	Juvenile bud stage	2.895
	SRR8316896	Juvenile bud stage	5.572
	SRR8316897	Juvenile bud stage	2.017
	SRR8316894	Third green stage	1.858
	SRR8316900	Third green stage	3.964
	SRR8316901	Third green stage	5.728
	SRR8316898	Complete white stage	0.368
	SRR8316899	Complete white stage	0.793
	SRR8316903	Complete white stage	0.726
	SRR8316902	Silver flowering stage	0.439
	SRR8316904	Silver flowering stage	0.396
	SRR8316905	Silver flowering stage	0.112
	SRR8316906	Gold flowering stage	1.256
	SRR8316907	Gold flowering stage	0.818
	SRR8316908	Gold flowering stage	0.413
SRP132670	SRR6706286	Control	1.645
	SRR6706287	Light intensity 50%	1.519
	SRR6706288	Light intensity 20%	1.237
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.999
	CNS0095593	Slightly white alabastrum(diploid) 2	2.806
	CNS0095594	Slightly white alabastrum(diploid) 3	6.284
	CNS0095595	Whole white alabastrum(diploid) 2	3.486
	CNS0095596	Whole white alabastrum(diploid) 3	4.791
	CNS0095597	Whole white alabastrum(diploid) 4	3.880
	CNS0095598	Silvery flower (diploied) 1	1.165
	CNS0095599	Silvery flower (diploied) 2	0.679
	CNS0095600	Silvery flower (diploied) 3	0.876
	CNS0095601	Golden flower (diploid) 1	0.773
	CNS0095602	Golden flower (diploid) 2	0.720
	CNS0095603	Golden flower (diploid) 3	0.607
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.343
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.392
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.255
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.781
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.676
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.949
	CNS0095610	Silvery flower (tetraploid) 1	0.446
	CNS0095611	Silvery flower (tetraploid) 2	0.410
	CNS0095612	Silvery flower (tetraploid) 3	0.918
	CNS0095613	Golden flower (tetraploid) 1	1.396
	CNS0095614	Golden flower (tetraploid) 2	0.848
	CNS0095615	Golden flower (tetraploid) 3	0.706
CRA001975	CRR073297	Stem 1	2.787
	CRR073298	Stem 2	4.314
	CRR073299	Stem 3	2.969
	CRR073300	Leaf 1	3.580
	CRR073301	Leaf 2	4.851
	CRR073302	Leaf 3	2.248
	CRR073303	Juvenile bud 1	0.814
	CRR073304	Juvenile bud 2	0.541
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.139
	CRR073307	Third green 2	0.541
	CRR073308	Third green 3	1.144
	CRR073309	Second white 1	0.092
	CRR073310	Second white 2	0.346
	CRR073311	Second white 3	0.141
	CRR073312	Silver flowering 1	0.242
	CRR073313	Silver flowering 2	0.516
	CRR073314	Silver flowering 3	0.134
	CRR073315	Gold flowering 1	0.559
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.368
	CRR073319	Tawny withering 2	1.184
	CRR073320	Tawny withering 3	0.745