Detail information of GWHGAAZE031255


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002513467.17.40076E-73ubiquitin-protein ligase, putative [Ricinus communis]
Swissprottr|Q9FZ70|FDL1_ARATH4E-17F-box/FBD/LRR-repeat protein At1g13570
trEMBLtr|B9RI98|B9RI98_RICCO3E-73Ubiquitin-protein ligase, putative {ECO:0000313|EMBL:EEF48870.1}
TAIR10AT1G13570.13E-16F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5596052655964436+
GWHAAZE00000009mRNA5596052655964436+
GWHAAZE00000009exon5596052655960733+
GWHAAZE00000009exon5596261155962711+
GWHAAZE00000009exon5596286655963756+
GWHAAZE00000009exon5596388055964026+
GWHAAZE00000009exon5596412855964436+
GWHAAZE00000009CDS5596052655960733+
GWHAAZE00000009CDS5596261155962711+
GWHAAZE00000009CDS5596286655963756+
GWHAAZE00000009CDS5596388055964026+
GWHAAZE00000009CDS5596412855964436+
Transcript Sequence

Network for GWHGAAZE031255

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box1191532.00E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE031255.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 301234567891011Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.305
SRR3591706second leaf2.409
SRR3591707mature leaf2.011
SRR3591708Shoot apex7.762
SRR3591709Stem7.961
SRR3591710White floral bud9.039
SRR3591711White flower9.264
SRR3591712Green floral bud4.708
SRR3591713Yellow flower7.500
SRP173429 SRR8316895Juvenile bud stage 3.265
SRR8316896Juvenile bud stage 4.352
SRR8316897Juvenile bud stage 1.228
SRR8316894Third green stage 1.774
SRR8316900Third green stage 5.949
SRR8316901Third green stage 4.711
SRR8316898Complete white stage 5.829
SRR8316899Complete white stage 8.233
SRR8316903Complete white stage 5.731
SRR8316902Silver flowering stage4.555
SRR8316904Silver flowering stage5.424
SRR8316905Silver flowering stage2.334
SRR8316906Gold flowering stage 7.424
SRR8316907Gold flowering stage 8.768
SRR8316908Gold flowering stage 8.576
SRP132670SRR6706286Control4.645
SRR6706287Light intensity 50%4.228
SRR6706288Light intensity 20%4.772
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.595
CNS0095593Slightly white alabastrum(diploid) 25.253
CNS0095594Slightly white alabastrum(diploid) 34.684
CNS0095595Whole white alabastrum(diploid) 25.254
CNS0095596Whole white alabastrum(diploid) 35.433
CNS0095597Whole white alabastrum(diploid) 44.117
CNS0095598Silvery flower (diploied) 16.785
CNS0095599Silvery flower (diploied) 24.250
CNS0095600Silvery flower (diploied) 39.150
CNS0095601Golden flower (diploid) 16.425
CNS0095602Golden flower (diploid) 28.509
CNS0095603Golden flower (diploid) 37.990
CNS0095604Slightly white alabastrum(tetraploid) 15.025
CNS0095605Slightly white alabastrum(tetraploid) 23.560
CNS0095606Slightly white alabastrum(tetraploid) 34.992
CNS0095607Whole white alabastrum(tetraploid) 14.089
CNS0095608Whole white alabastrum(tetraploid) 24.947
CNS0095609Whole white alabastrum(tetraploid) 34.048
CNS0095610Silvery flower (tetraploid) 18.054
CNS0095611Silvery flower (tetraploid) 29.812
CNS0095612Silvery flower (tetraploid) 39.336
CNS0095613Golden flower (tetraploid) 17.573
CNS0095614Golden flower (tetraploid) 27.539
CNS0095615Golden flower (tetraploid) 39.266
CRA001975CRR073297Stem 110.316
CRR073298Stem 27.903
CRR073299Stem 37.530
CRR073300Leaf 17.574
CRR073301Leaf 26.794
CRR073302Leaf 36.307
CRR073303Juvenile bud 16.694
CRR073304Juvenile bud 24.985
CRR073305Juvenile bud 36.791
CRR073306Third green 11.610
CRR073307Third green 22.797
CRR073308Third green 33.556
CRR073309Second white 14.295
CRR073310Second white 23.030
CRR073311Second white 32.051
CRR073312Silver flowering 12.514
CRR073313Silver flowering 22.028
CRR073314Silver flowering 32.034
CRR073315Gold flowering 15.291
CRR073316Gold flowering 22.549
CRR073317Gold flowering 32.889
CRR073318Tawny withering 15.851
CRR073319Tawny withering 24.956
CRR073320Tawny withering 35.937