Gene detail

Detail information of GWHGAAZE031258

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP09459.1	4.3035E-134	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q0JIC2\|GAM1_ORYSJ	8E-39	Transcription factor GAMYB
trEMBL	tr\|A0A068UMH9\|A0A068UMH9_COFCA	2E-134	Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313\|EMBL:CDP09459.1}
TAIR10	AT3G60460.1	8E-59	myb-like HTH transcriptional regulator family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	55990660	55993185	-
GWHAAZE00000009	mRNA	55990660	55993185	-
GWHAAZE00000009	exon	55992998	55993185	-
GWHAAZE00000009	exon	55992232	55992481	-
GWHAAZE00000009	exon	55990660	55991163	-
GWHAAZE00000009	five_prime_UTR	55993174	55993185	-
GWHAAZE00000009	CDS	55992998	55993173	-
GWHAAZE00000009	CDS	55992232	55992481	-
GWHAAZE00000009	CDS	55990660	55991163	-

Transcript Sequence
>GWHTAAZE031292 GAATATGATGAAATGGGAGAGGTAAAGAAAGGGCCATGGAAAGCAGAGGAGGATGAAGTTTTGATCAATCATGTCAAGAAATACGGCCCAAGAGATTGGAGCTCCATTCGATCCAAAGGACTCTTGCAGCGTACCGGAAAATCTTGCCGCCTCCGTTGGGTTAATAAACTCCGCCCTAATTTAAAGAACGGAGTGAAGTTCTCGGCGGAGGAGGAGAGGACAGTGATAGAGTTGCAAGCACAGTTTGGGAACAAATGGGCGAGAATCGCTACATATTTGCCCGGAAGGACTGATAATGATGTGAAGAATTTTTGGAGTAGCAGACAGAAGAGATTGGCTAGGATTTTGCAAACACCAGCAGCACCATCAACTGCCAAGTCACACAAGTACAATAATGGTGAAGTAGTCCCTTCTCTTCATGATATTCCCGCTTTGGAGACACCAAATTTCAACTCTTCGACCGAGGAAGAATCATCCTCCAAGGGACAATCTTGTTCATCGTCCACCTACATTGACAACCCTGAGCCGATCAGGATGGTGCCATTACCCGAACTACTAAACCCTAACTTGCTTGCATTTGAACAAAACCTCCTTCAACTAGACTTCACCCCTATCGAGAAGAAACCCTACATTGATCACTTACCACCACCACCACTCTCCACCTTCCCCCAACTCGAGCCAGAGCTTCCTCTCGGACTTGAGAGCCAAGAACTAGAAACTCAGCTAGGTGACCCAAACTTTCTTGACATGTTTGGACAAGCAGAATCATCTGATATTATACAACTTCCTTATGTATCGCCAGGTTTTGGAGCTGAGAGGAGATATGAAATTGGTGGGAGTAGGGGGAATGAGAAGCCAGTGACCCCGGATAGCTTCATCGATGACTTTCCGATGGACATATTTGATCAAATCGAAATGCTTCCAAGCCCTTCGGATTGGTGA

Network for GWHGAAZE031258

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13921.7	Myb_DNA-bind_6	9	59	5.20E-12
PF00249.32	Myb_DNA-binding	62	101	1.30E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.435
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.021
	SRR3591708	Shoot apex	0.095
	SRR3591709	Stem	0.840
	SRR3591710	White floral bud	1.927
	SRR3591711	White flower	0.957
	SRR3591712	Green floral bud	3.034
	SRR3591713	Yellow flower	0.084
SRP173429	SRR8316895	Juvenile bud stage	0.759
	SRR8316896	Juvenile bud stage	4.584
	SRR8316897	Juvenile bud stage	1.619
	SRR8316894	Third green stage	1.220
	SRR8316900	Third green stage	4.658
	SRR8316901	Third green stage	4.573
	SRR8316898	Complete white stage	0.030
	SRR8316899	Complete white stage	0.576
	SRR8316903	Complete white stage	0.152
	SRR8316902	Silver flowering stage	0.036
	SRR8316904	Silver flowering stage	0.073
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.028
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.027
SRP132670	SRR6706286	Control	1.243
	SRR6706287	Light intensity 50%	1.318
	SRR6706288	Light intensity 20%	0.852
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.927
	CNS0095593	Slightly white alabastrum(diploid) 2	6.884
	CNS0095594	Slightly white alabastrum(diploid) 3	8.133
	CNS0095595	Whole white alabastrum(diploid) 2	7.985
	CNS0095596	Whole white alabastrum(diploid) 3	9.606
	CNS0095597	Whole white alabastrum(diploid) 4	4.112
	CNS0095598	Silvery flower (diploied) 1	0.022
	CNS0095599	Silvery flower (diploied) 2	0.262
	CNS0095600	Silvery flower (diploied) 3	0.021
	CNS0095601	Golden flower (diploid) 1	0.324
	CNS0095602	Golden flower (diploid) 2	0.079
	CNS0095603	Golden flower (diploid) 3	0.045
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.783
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.876
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.537
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.073
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.905
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.329
	CNS0095610	Silvery flower (tetraploid) 1	0.100
	CNS0095611	Silvery flower (tetraploid) 2	0.158
	CNS0095612	Silvery flower (tetraploid) 3	0.339
	CNS0095613	Golden flower (tetraploid) 1	0.048
	CNS0095614	Golden flower (tetraploid) 2	0.187
	CNS0095615	Golden flower (tetraploid) 3	0.175
CRA001975	CRR073297	Stem 1	2.814
	CRR073298	Stem 2	2.256
	CRR073299	Stem 3	0.568
	CRR073300	Leaf 1	2.939
	CRR073301	Leaf 2	5.160
	CRR073302	Leaf 3	1.990
	CRR073303	Juvenile bud 1	0.075
	CRR073304	Juvenile bud 2	0.135
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.472
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.933
	CRR073319	Tawny withering 2	0.811
	CRR073320	Tawny withering 3	0.216