Gene detail

Detail information of GWHGAAZE031265

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010518110.1	4.524E-135	PREDICTED: uncharacterized protein DDB_G0274915-like [Camelina sativa]
Swissprot	tr\|Q8L7F7\|NUP62_ARATH	2E-130	Nuclear pore complex protein NUP62 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|M5XS35\|M5XS35_PRUPE	2E-134	Uncharacterized protein {ECO:0000313\|EMBL:EMJ21835.1}
TAIR10	AT2G45000.1	4E-102	structural constituent of nuclear pore

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	56140547	56152194	+
GWHAAZE00000009	mRNA	56140547	56152194	+
GWHAAZE00000009	exon	56140547	56140589	+
GWHAAZE00000009	exon	56142131	56142221	+
GWHAAZE00000009	exon	56142702	56142780	+
GWHAAZE00000009	exon	56143092	56143214	+
GWHAAZE00000009	exon	56143434	56143511	+
GWHAAZE00000009	exon	56146137	56146240	+
GWHAAZE00000009	exon	56148256	56148343	+
GWHAAZE00000009	exon	56148782	56148880	+
GWHAAZE00000009	exon	56151864	56152194	+
GWHAAZE00000009	CDS	56140547	56140589	+
GWHAAZE00000009	CDS	56142131	56142221	+
GWHAAZE00000009	CDS	56142702	56142780	+
GWHAAZE00000009	CDS	56143092	56143214	+
GWHAAZE00000009	CDS	56143434	56143511	+
GWHAAZE00000009	CDS	56146137	56146240	+
GWHAAZE00000009	CDS	56148256	56148343	+
GWHAAZE00000009	CDS	56148782	56148880	+
GWHAAZE00000009	CDS	56151864	56151959	+
GWHAAZE00000009	three_prime_UTR	56151960	56152194	+

Transcript Sequence
>GWHTAAZE031299 ATGTTTTTGGAAGGGGAAGGATTTGGTTTGAGCCAAGGAGCGGGTGTCCCTGCTTCAACGTCTACAGCTACAACTTCAAATGCCAGTTCTGCTGCTCAGACATCATCATCCCTAGTTGTAGCTTCCAGTAGTGGGACAACTTCAACTGTTGGCGCAGCTGTTGGCTCTGCACCAAAATTACCATCTGAAATCACTGGAAAAACTGTTGAGGAGATTATCAAGGAGTGGAATGCAGAGCTGCAAGAGCGAACAGGCAAATTCAGAACGCAGGCTAATGCTATAGCTGAGTGGGATAAGAGGATCTTGCAGAACCGTGATGTTCTTCTAAAGCTTGAGACTGAAGTAGCGAAGGTGGTGGAGACCCAAGCTAACTTGGAACGACAACTGGAGCTAATTGAGACTCATCAACAAGAGGTTGACAAGTCTTTGCAAAGCATGGAAGAAGAAGCTGAGCGTATATACAAGGATGAGCGTGGAGTACTTCTCGATGACGAAGCTGCATTAACAAGAGATGCAATGTATGAGCAGGCTGAATTCATTGAGAGGGAACTGGAGCAGGTAACAGAGCAAATTAAATCCATTATTCAGACTATTAATGCCAACCAGGCTGGAGAACTTGAGGCTATTGATGGGATGAATCCTCTGGACGTCGTCATCCGAATCTTAAACAATCAATTAAGCTCGTTAATGTGGATTGACGAAAAGGCTGAAGAATTCTCGTCAAAAATTCAGAAGCTTGCAACACAAGGTTCTGCTGTGGATCGTGAAGTGACGGGCACAAAATTCTGGTTGACCCGCTAGAAGGATTTGTTTGTTAAATTTCCTTTTATTTTATTTTTGAAGTTAGATCATACTGGCAAAATCAAATTCAGGAGGTGCAGAAAATAACTGTTGTGGGGAGATGAACTTGATAATGAATTTGTGGGTGGTGCATGTGAATATACAAACTATTTTCGTATGTAGACTATTTACTGTTGTTTCCGAACATCGCAAGTTGCGTTTTTATAAGAGTTTTTGTATTTTTGCAGTTGATATA

Network for GWHGAAZE031265

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05064.14	Nsp1_C	57	157	8.40E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14306	NUP62, NSP1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.839
	SRR3591706	second leaf	9.151
	SRR3591707	mature leaf	9.940
	SRR3591708	Shoot apex	35.651
	SRR3591709	Stem	12.468
	SRR3591710	White floral bud	10.729
	SRR3591711	White flower	12.863
	SRR3591712	Green floral bud	12.377
	SRR3591713	Yellow flower	9.624
SRP173429	SRR8316895	Juvenile bud stage	9.506
	SRR8316896	Juvenile bud stage	12.573
	SRR8316897	Juvenile bud stage	7.614
	SRR8316894	Third green stage	3.387
	SRR8316900	Third green stage	10.198
	SRR8316901	Third green stage	9.154
	SRR8316898	Complete white stage	0.913
	SRR8316899	Complete white stage	8.408
	SRR8316903	Complete white stage	4.582
	SRR8316902	Silver flowering stage	2.032
	SRR8316904	Silver flowering stage	2.541
	SRR8316905	Silver flowering stage	2.036
	SRR8316906	Gold flowering stage	4.356
	SRR8316907	Gold flowering stage	3.040
	SRR8316908	Gold flowering stage	4.280
SRP132670	SRR6706286	Control	6.709
	SRR6706287	Light intensity 50%	6.917
	SRR6706288	Light intensity 20%	7.864
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.246
	CNS0095593	Slightly white alabastrum(diploid) 2	12.386
	CNS0095594	Slightly white alabastrum(diploid) 3	13.118
	CNS0095595	Whole white alabastrum(diploid) 2	10.731
	CNS0095596	Whole white alabastrum(diploid) 3	8.733
	CNS0095597	Whole white alabastrum(diploid) 4	6.949
	CNS0095598	Silvery flower (diploied) 1	9.689
	CNS0095599	Silvery flower (diploied) 2	12.101
	CNS0095600	Silvery flower (diploied) 3	9.277
	CNS0095601	Golden flower (diploid) 1	8.798
	CNS0095602	Golden flower (diploid) 2	7.366
	CNS0095603	Golden flower (diploid) 3	6.531
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.760
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.953
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.595
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.605
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.341
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.670
	CNS0095610	Silvery flower (tetraploid) 1	8.504
	CNS0095611	Silvery flower (tetraploid) 2	9.537
	CNS0095612	Silvery flower (tetraploid) 3	5.540
	CNS0095613	Golden flower (tetraploid) 1	6.026
	CNS0095614	Golden flower (tetraploid) 2	5.921
	CNS0095615	Golden flower (tetraploid) 3	14.419
CRA001975	CRR073297	Stem 1	18.155
	CRR073298	Stem 2	17.213
	CRR073299	Stem 3	18.303
	CRR073300	Leaf 1	13.492
	CRR073301	Leaf 2	14.883
	CRR073302	Leaf 3	11.021
	CRR073303	Juvenile bud 1	14.941
	CRR073304	Juvenile bud 2	4.770
	CRR073305	Juvenile bud 3	17.119
	CRR073306	Third green 1	1.411
	CRR073307	Third green 2	2.311
	CRR073308	Third green 3	4.456
	CRR073309	Second white 1	1.639
	CRR073310	Second white 2	3.116
	CRR073311	Second white 3	1.821
	CRR073312	Silver flowering 1	1.212
	CRR073313	Silver flowering 2	2.048
	CRR073314	Silver flowering 3	1.553
	CRR073315	Gold flowering 1	11.199
	CRR073316	Gold flowering 2	12.904
	CRR073317	Gold flowering 3	9.459
	CRR073318	Tawny withering 1	22.957
	CRR073319	Tawny withering 2	21.643
	CRR073320	Tawny withering 3	26.035