Gene detail

Detail information of GWHGAAZE031270

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFC17960.1	2.4321E-114	squamosa promoter binding protein-like 8 [Betula platyphylla]
Swissprot	tr\|Q8GXL3\|SPL8_ARATH	2E-78	Squamosa promoter-binding-like protein 8
trEMBL	tr\|H9CNK3\|H9CNK3_BETPL	9E-115	Squamosa promoter binding protein-like 8 {ECO:0000313\|EMBL:AFC17960.1}
TAIR10	AT1G02065.1	4E-60	squamosa promoter binding protein-like 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	56216046	56218161	+
GWHAAZE00000009	mRNA	56216046	56218161	+
GWHAAZE00000009	exon	56216046	56216644	+
GWHAAZE00000009	exon	56217726	56217874	+
GWHAAZE00000009	exon	56218007	56218161	+
GWHAAZE00000009	CDS	56216046	56216644	+
GWHAAZE00000009	CDS	56217726	56217874	+
GWHAAZE00000009	CDS	56218007	56218161	+

Transcript Sequence
>GWHTAAZE031304 ATGTTGGACTATCACTGGGGAAACCCCTCGACAGCAATGTTCACCGGCGACGAACCGCCACCTCAAGATGAAAACGAGGAAAACCGTCAGATTTTCGATGATCATTACAATGTTCAAACCTTCAACGAAACCCTAATTTCCCCAAATGCCTTCAACCCAAATCACCACCACTTTAATAATCCACCCGACCCACATACCCATTTCCACCCTCTCTTCGACCCACGCGCCTACGCCGCATCCTACCCACCTCCTCCAATGCTTTCACTCGAGCCTGTCAGTGAGACTTCTGGGTACATGGTGGTCCCAAAGAACGAACCGGCCGGTTCGGTCGAGTTTATGAGCCGGATTGGGCTAAATTTGGGCGGCCGGACTTATTTCTCTTCCTCTGAGGATGACTTTGTGAACCGGCTTTACCGCCGGTCTAGGGGGATCGAACCGGGTTCGTTCAACACGCCGAGGTGCCAGGCCGAGGGGTGCAGCGCGGATCTGAGCCACGCCAAGCACTACCACCGCCGCCATAAGGTCTGCGAGTTTCACTCCAAAGCCTCCACCGTCATCGCTGCCGGTCTGACCCAACGGTTCTGCCAGCAGTGCAGCAGATTCCATCTTCTGGCGGAATTTGACAATGGGAAAAGAAGTTGCCGGAAACGGCTGGCAGATCACAACCGCCGGAGGCGAAAATCTCAGCAACCAAACAAGTCCCAGCACGAAAATCCCCGCAATTCTTCTTCATCAGAAAAACATGCAAGGTCTCCGCGGGAATCCGGAACCCAACCCCCGTCCTCGGTCACCGTAGCCGTTTCACCGCCTCTGATATCATTGGATAGTTTCCGGCAAAGATCTTATCAAGCTAATGCATTTTCTTCGGCACCGACCAGTTCGCTCTTTTTCTCGAATGGGTAA

Network for GWHGAAZE031270

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	154	227	1.50E-30

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.600
	SRR3591706	second leaf	3.063
	SRR3591707	mature leaf	0.459
	SRR3591708	Shoot apex	12.989
	SRR3591709	Stem	3.702
	SRR3591710	White floral bud	9.309
	SRR3591711	White flower	14.232
	SRR3591712	Green floral bud	3.311
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	24.032
	SRR8316896	Juvenile bud stage	13.951
	SRR8316897	Juvenile bud stage	6.944
	SRR8316894	Third green stage	4.920
	SRR8316900	Third green stage	1.190
	SRR8316901	Third green stage	2.127
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	18.448
	SRR8316903	Complete white stage	4.258
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.119
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	5.502
	SRR6706287	Light intensity 50%	6.554
	SRR6706288	Light intensity 20%	4.809
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.595
	CNS0095593	Slightly white alabastrum(diploid) 2	21.915
	CNS0095594	Slightly white alabastrum(diploid) 3	19.015
	CNS0095595	Whole white alabastrum(diploid) 2	17.482
	CNS0095596	Whole white alabastrum(diploid) 3	1.514
	CNS0095597	Whole white alabastrum(diploid) 4	8.594
	CNS0095598	Silvery flower (diploied) 1	77.227
	CNS0095599	Silvery flower (diploied) 2	61.613
	CNS0095600	Silvery flower (diploied) 3	16.986
	CNS0095601	Golden flower (diploid) 1	67.197
	CNS0095602	Golden flower (diploid) 2	39.970
	CNS0095603	Golden flower (diploid) 3	37.509
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.304
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.095
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.416
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.398
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.667
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.879
	CNS0095610	Silvery flower (tetraploid) 1	0.362
	CNS0095611	Silvery flower (tetraploid) 2	10.334
	CNS0095612	Silvery flower (tetraploid) 3	7.120
	CNS0095613	Golden flower (tetraploid) 1	0.040
	CNS0095614	Golden flower (tetraploid) 2	0.340
	CNS0095615	Golden flower (tetraploid) 3	0.167
CRA001975	CRR073297	Stem 1	30.336
	CRR073298	Stem 2	23.451
	CRR073299	Stem 3	38.313
	CRR073300	Leaf 1	4.120
	CRR073301	Leaf 2	7.014
	CRR073302	Leaf 3	2.269
	CRR073303	Juvenile bud 1	1.323
	CRR073304	Juvenile bud 2	0.462
	CRR073305	Juvenile bud 3	2.581
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.042
	CRR073308	Third green 3	0.692
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.282
	CRR073316	Gold flowering 2	2.113
	CRR073317	Gold flowering 3	1.535
	CRR073318	Tawny withering 1	1.144
	CRR073319	Tawny withering 2	2.085
	CRR073320	Tawny withering 3	1.658