Gene detail

Detail information of GWHGAAZE031271

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP09488.1	4.8906E-119	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q01JD1\|SPL7_ORYSI	5E-53	Squamosa promoter-binding-like protein 7
trEMBL	tr\|A0A068UPD1\|A0A068UPD1_COFCA	2E-119	Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313\|EMBL:CDP09488.1}
TAIR10	AT1G27370.4	4E-33	squamosa promoter binding protein-like 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	56232269	56237317	-
GWHAAZE00000009	mRNA	56232269	56237317	-
GWHAAZE00000009	exon	56232269	56232720	-
GWHAAZE00000009	exon	56235398	56235519	-
GWHAAZE00000009	exon	56236737	56237317	-
GWHAAZE00000009	CDS	56236737	56237317	-
GWHAAZE00000009	CDS	56235398	56235519	-
GWHAAZE00000009	CDS	56232269	56232720	-

Transcript Sequence
>GWHTAAZE031305 ATGGAAAATGGTTGGAACTTATTTAGTAGTAGTGGCAGAGGGCAAAATAGTAATTGTACCAACCTAGCATGGGATGTGTGGGAGTCACGGTATGATTGGAGCAGCAGTAGTAATAATCCCTACAACCACATCGCCGCCGCACCAGTCAACACCGCCGGCATGGGTGAAGCACACGCGCTCATGTTCTCGCGTGGGACCCATGATCCCCGCCACCGCGCGTGCTGCTCCTCGCCCCATCCCTCCGTCTACGACGCATCCGGGTCGGGCCAGCACTACCATCCGGACCCGCACCTGATGTGCCTGAAGCTGGGAAAGAGGCACTACTTCGAGGACCCGAGTGGCCGACCCGGTTTCTCGGTGTCGAAGAGAGGGAAGGCGTATTATGCTGGGGGCGGAGGGGGTGAGTTAGTGGGGCCGTCGACGGTGGCCTCGGTGGCGAGATGTCAGGTGGAGGGGTGCCACGTGGCGCTGGTGAACGCGAAGGAGTACCACAGGAGGCACAAGGTGTGTGAAATGCACTCCAAGGCTCCGAAAGTGGTGGTGCTTGGCCTTGACCAACGCTTCTGTCAACAGTGTAGCAGGTTTCATGCAGTGACAGAGTTTGATGAAGCAAAGAGGAGTTGTAGGAGGAGATTAGCAGGGCACAATGAGAGAAGAAGAAAGAGCTCTCATGACCATTCTCTTCCCAGAAACCCTTCTCAAGAAAATAATCCAGTGGCCGGTAAATTTCCCTACATATCATCGACAGGACGTGCTCTCTCTCTTCTGTCATCACCGAAGCACGACCCGTGGACCCCACCAGCCGACCTCTCTTCACGGTGCAGTGCCGCTCTGCGAGAGCTAATCGCTGAGAACAGAGCGGCCACCACAATGGCTCGACCACTCATGGTCGATAGGGACACCCATTGGCACCACCATCAAGCCATTGAGGAGTTGAATAGGGGGCCCCACTATGAGCCCAGCACGTACGGGTCCCACGCATACCAAGTAGGGCACGCGTGGGACCGTTTCGGCGAAGGAGGGGCGAACGTGACATTGGACTTAATGCAGGCACCGAGTTCGGCTTTCGGGCTTTTGTCTATGAGGGGGAAATCTAGTGAGGATGAAGAGTGTTCTGAGTTGTGGAGCTCTTTGGGAGGGACTCATGTAGTTTGA

Network for GWHGAAZE031271

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	148	221	1.70E-31

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.517
	SRR3591706	second leaf	0.233
	SRR3591707	mature leaf	0.452
	SRR3591708	Shoot apex	5.051
	SRR3591709	Stem	0.979
	SRR3591710	White floral bud	0.635
	SRR3591711	White flower	0.276
	SRR3591712	Green floral bud	0.059
	SRR3591713	Yellow flower	0.189
SRP173429	SRR8316895	Juvenile bud stage	0.422
	SRR8316896	Juvenile bud stage	0.088
	SRR8316897	Juvenile bud stage	0.230
	SRR8316894	Third green stage	0.155
	SRR8316900	Third green stage	0.164
	SRR8316901	Third green stage	0.540
	SRR8316898	Complete white stage	0.156
	SRR8316899	Complete white stage	0.641
	SRR8316903	Complete white stage	0.133
	SRR8316902	Silver flowering stage	0.116
	SRR8316904	Silver flowering stage	0.117
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.437
	SRR8316907	Gold flowering stage	0.182
	SRR8316908	Gold flowering stage	0.130
SRP132670	SRR6706286	Control	0.204
	SRR6706287	Light intensity 50%	0.174
	SRR6706288	Light intensity 20%	0.184
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.985
	CNS0095593	Slightly white alabastrum(diploid) 2	1.079
	CNS0095594	Slightly white alabastrum(diploid) 3	0.724
	CNS0095595	Whole white alabastrum(diploid) 2	0.856
	CNS0095596	Whole white alabastrum(diploid) 3	0.660
	CNS0095597	Whole white alabastrum(diploid) 4	0.774
	CNS0095598	Silvery flower (diploied) 1	1.366
	CNS0095599	Silvery flower (diploied) 2	1.728
	CNS0095600	Silvery flower (diploied) 3	0.408
	CNS0095601	Golden flower (diploid) 1	2.099
	CNS0095602	Golden flower (diploid) 2	1.388
	CNS0095603	Golden flower (diploid) 3	1.015
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.529
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.614
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.351
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.279
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.331
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.165
	CNS0095610	Silvery flower (tetraploid) 1	0.267
	CNS0095611	Silvery flower (tetraploid) 2	0.216
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.044
	CNS0095614	Golden flower (tetraploid) 2	0.044
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.223
	CRR073298	Stem 2	0.115
	CRR073299	Stem 3	0.241
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.384
	CRR073302	Leaf 3	0.506
	CRR073303	Juvenile bud 1	0.189
	CRR073304	Juvenile bud 2	0.077
	CRR073305	Juvenile bud 3	0.058
	CRR073306	Third green 1	0.042
	CRR073307	Third green 2	0.542
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.145
	CRR073310	Second white 2	0.039
	CRR073311	Second white 3	0.119
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.364
	CRR073316	Gold flowering 2	0.192
	CRR073317	Gold flowering 3	0.236
	CRR073318	Tawny withering 1	0.318
	CRR073319	Tawny withering 2	0.156
	CRR073320	Tawny withering 3	0.592