Gene detail

Detail information of GWHGAAZE031279

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002511650.1	4.995E-163	conserved hypothetical protein [Ricinus communis]
Swissprot	tr\|O65499\|ZAT3_ARATH	5E-30	Zinc finger protein ZAT3
trEMBL	tr\|B9RD61\|B9RD61_RICCO	2E-163	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF50319.1}
TAIR10	AT4G35280.1	7E-27	C2H2-like zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	56467568	56468946	+
GWHAAZE00000009	mRNA	56467568	56468946	+
GWHAAZE00000009	exon	56467568	56467871	+
GWHAAZE00000009	exon	56468018	56468946	+
GWHAAZE00000009	CDS	56467568	56467871	+
GWHAAZE00000009	CDS	56468018	56468946	+

Transcript Sequence
>GWHTAAZE031313 ATGTGTGGGAGAGCTCTAGGTGGTCACATGAGAGCTCATGGTATAGGAGATGAGAGTGGAAATGTAGATGATGATGATCAAGGGAGCGATTGGGAGGATAAATTTGGAGGGCATAGTAACAAGCAAATGTACGCATTAAGAACAAACCCTAATCGGTTAAAAAGTGTACGAATATGTAAGAATTGTGGTAAAGAGTTTTTGTCATGGAAATCCTTTCTCGAGCATGGAAGAAAATGCAGCTCCAAGGATGCTGAGTCCCTCGTGTCCTTCCCCTCAGAGGAGGAGGACGACATAGGACTAAAAGGGCCTGAAGAATCTTGTGCTTCTGCAAGTAAGGAGGAGGACAAACGGAACCCTAGTGTCACTGCCTTCCTGGCTCCTTTATCGAGAGCACAACTTCCTATAGACAGGGCAAAAGGTGTTGCGAAAGGAATGTTCGAATGCAAAGCTTGCAAGAAAATGTTCAGTTCACACCAAGCATTAGGAGGACATAGAGCAAGTCACAAGAAGGTTAAAGGGTGTTTCGCAGCTAGGAATGATCAATTCAACGAAACCCTAGTAGACGATGATGTAATCACACATGAAGATTACTACCCTTCTAAATCACCATCTTCTTTACATTTTGACAAAGGTCCTGCCACACTAGCCGGAGCTTCTCGAAGAAAATCAAAAGTTCACCGGTGTTCAATATGTAACCGGATTTTCTCATCGGGCCAAGCCCTTGGTGGACACAAGAGATGCCATTGGCTCACTTCAAATGCACCAGAGATACCTTCTTTCACAAAGTATCATCAATTTCAAGATAAACACATCAAACAGTATAGACCACCACAGTTGCCGACTGAATCCAAACCTCTCGATCTCAACCTTCCTGCACCGGTGCACCTTCCAGCACCAGTGCGCAACATGGCCGGAGTCCGACGGGACCCGCTGAACCTCTTGAGCTTTGAAGTGTCCACTGAAATAAATCTTCAATATTCATGGATAGATGTTGACAGAGAAGGGAAAGATGATAAACTTCACCAATGCAACCATTTCCCAAATCTAAGCAAGGATGGGGAGAAGAACAAGTATAGTTATAATGTGACCATGCAAACTATGGATGACGAAGCTGACAGCAAGGTGAAGTTAACAAAGCTAAGTGAGCTAAAGGACATGAACCTCAATGGGAGTTCCTCTCCATGGTTGCAAGTAGGTATTGGGTCTGCAAGTGATGCGGGTGGTGAACCGTAA

Network for GWHGAAZE031279

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13912.7	zf-C2H2_6	146	170	5.00E-08
PF13912.7	zf-C2H2_6	225	249	4.00E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.134
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	5.266
	SRR3591713	Yellow flower	0.104
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.075
	SRR8316894	Third green stage	0.304
	SRR8316900	Third green stage	2.342
	SRR8316901	Third green stage	1.365
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.014
	SRR8316904	Silver flowering stage	0.028
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.565
	SRR6706287	Light intensity 50%	1.647
	SRR6706288	Light intensity 20%	1.435
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.158
	CNS0095593	Slightly white alabastrum(diploid) 2	1.557
	CNS0095594	Slightly white alabastrum(diploid) 3	2.065
	CNS0095595	Whole white alabastrum(diploid) 2	4.814
	CNS0095596	Whole white alabastrum(diploid) 3	4.964
	CNS0095597	Whole white alabastrum(diploid) 4	6.308
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.184
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.252
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.550
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.738
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.829
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.852
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.056
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.311
	CRR073298	Stem 2	0.752
	CRR073299	Stem 3	0.034
	CRR073300	Leaf 1	2.280
	CRR073301	Leaf 2	0.882
	CRR073302	Leaf 3	0.621
	CRR073303	Juvenile bud 1	0.989
	CRR073304	Juvenile bud 2	5.072
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.157
	CRR073308	Third green 3	0.132
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.003
	CRR073311	Second white 3	0.004
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.055
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.083
	CRR073320	Tawny withering 3	0.000