Detail information of GWHGAAZE031284


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP09504.10unnamed protein product [Coffea canephora]
Swissprottr|O81316|SCL6_ARATH3E-143Scarecrow-like protein 6
trEMBLtr|A0A068UMM3|A0A068UMM3_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313|EMBL:CDP09504.1}
TAIR10AT4G00150.13E-118GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5653516556536244-
GWHAAZE00000009mRNA5653516556536244-
GWHAAZE00000009exon5653516556536244-
GWHAAZE00000009CDS5653516556536244-
Transcript Sequence

Network for GWHGAAZE031284

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS23582.20E-95
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.799
SRR3591706second leaf9.766
SRR3591707mature leaf8.713
SRR3591708Shoot apex28.539
SRR3591709Stem13.247
SRR3591710White floral bud8.194
SRR3591711White flower5.693
SRR3591712Green floral bud12.041
SRR3591713Yellow flower1.583
SRP173429 SRR8316895Juvenile bud stage 5.324
SRR8316896Juvenile bud stage 4.968
SRR8316897Juvenile bud stage 1.332
SRR8316894Third green stage 3.195
SRR8316900Third green stage 6.959
SRR8316901Third green stage 4.093
SRR8316898Complete white stage 0.866
SRR8316899Complete white stage 7.921
SRR8316903Complete white stage 2.742
SRR8316902Silver flowering stage0.201
SRR8316904Silver flowering stage0.750
SRR8316905Silver flowering stage0.287
SRR8316906Gold flowering stage 0.235
SRR8316907Gold flowering stage 0.273
SRR8316908Gold flowering stage 0.346
SRP132670SRR6706286Control6.347
SRR6706287Light intensity 50%6.912
SRR6706288Light intensity 20%8.253
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.643
CNS0095593Slightly white alabastrum(diploid) 27.292
CNS0095594Slightly white alabastrum(diploid) 37.958
CNS0095595Whole white alabastrum(diploid) 26.016
CNS0095596Whole white alabastrum(diploid) 34.513
CNS0095597Whole white alabastrum(diploid) 45.254
CNS0095598Silvery flower (diploied) 115.011
CNS0095599Silvery flower (diploied) 27.192
CNS0095600Silvery flower (diploied) 32.151
CNS0095601Golden flower (diploid) 16.773
CNS0095602Golden flower (diploid) 23.948
CNS0095603Golden flower (diploid) 34.533
CNS0095604Slightly white alabastrum(tetraploid) 18.022
CNS0095605Slightly white alabastrum(tetraploid) 26.232
CNS0095606Slightly white alabastrum(tetraploid) 311.483
CNS0095607Whole white alabastrum(tetraploid) 16.082
CNS0095608Whole white alabastrum(tetraploid) 24.247
CNS0095609Whole white alabastrum(tetraploid) 34.230
CNS0095610Silvery flower (tetraploid) 10.626
CNS0095611Silvery flower (tetraploid) 22.939
CNS0095612Silvery flower (tetraploid) 33.532
CNS0095613Golden flower (tetraploid) 10.714
CNS0095614Golden flower (tetraploid) 20.539
CNS0095615Golden flower (tetraploid) 30.155
CRA001975CRR073297Stem 18.995
CRR073298Stem 27.785
CRR073299Stem 312.901
CRR073300Leaf 16.300
CRR073301Leaf 28.362
CRR073302Leaf 34.790
CRR073303Juvenile bud 15.891
CRR073304Juvenile bud 22.647
CRR073305Juvenile bud 310.184
CRR073306Third green 10.746
CRR073307Third green 21.388
CRR073308Third green 31.205
CRR073309Second white 10.034
CRR073310Second white 20.119
CRR073311Second white 30.018
CRR073312Silver flowering 10.518
CRR073313Silver flowering 20.292
CRR073314Silver flowering 30.875
CRR073315Gold flowering 16.790
CRR073316Gold flowering 27.493
CRR073317Gold flowering 38.720
CRR073318Tawny withering 111.506
CRR073319Tawny withering 210.017
CRR073320Tawny withering 314.850