Gene detail

Detail information of GWHGAAZE031285

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002513467.1	3.33305E-67	ubiquitin-protein ligase, putative [Ricinus communis]
Swissprot	tr\|Q84W80\|FBL42_ARATH	4E-16	F-box/LRR-repeat protein At3g03360
trEMBL	tr\|B9RI98\|B9RI98_RICCO	1E-67	Ubiquitin-protein ligase, putative {ECO:0000313\|EMBL:EEF48870.1}
TAIR10	AT3G03360.1	2E-15	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	56559987	56561733	+
GWHAAZE00000009	mRNA	56559987	56561733	+
GWHAAZE00000009	exon	56559987	56560093	+
GWHAAZE00000009	exon	56560228	56561058	+
GWHAAZE00000009	exon	56561184	56561330	+
GWHAAZE00000009	exon	56561419	56561733	+
GWHAAZE00000009	five_prime_UTR	56559987	56560054	+
GWHAAZE00000009	CDS	56560055	56560093	+
GWHAAZE00000009	CDS	56560228	56561058	+
GWHAAZE00000009	CDS	56561184	56561330	+
GWHAAZE00000009	CDS	56561419	56561733	+

Transcript Sequence
>GWHTAAZE031319 TTATAAGGAATAATTCCTTTTATACAATCAGATCAGTTGGGGCTGTTCAGTTTGGAGCAATCTATCTAATGGTGAAAAGTTTGAATCTCACTTCTAAATTACAGAAGTGTAGTAGGAGCAAAGATGTGTCTTTGCCTGATCAGATTAGTGAATTGCCTGAAGAAATTCTTATCAATATTTTGTCCCTCCTGACGCTGAGAGAAGCTGTGCGTACTAGTGTTCTCTCTCATAGATGGAAGAACTTGTGGACATTTACCACTGGTAGCTTGGACTTTGAATTTGTGGATCAAGATATGGGAACCTACTTAAGCAGGGTGAACAAAATCTTGAACTCGCACCAGGGTGCCACCATCGACGAATTTAGAGTCAAATTTGATTGGCAGATAAGAGCTAGATCAGATATTGATAGGTGGCTTAATTTTGCCCTACGTAAGAGAGTGCAGAGGCTTGAACTAAACTTGGATGGAGTGAGAGCAAGCTGGGATGACCGCTACCCTTTTTTTGCGGCACCATCTCTTGGCTCGAATAACAACATCAATAATTTCAGTTGCTTGAGAAGCCTGAATTTGACCCATGTAGACATGAGGGGAGAATTTCTCGTTTACCTCTTGTCCAATTGCCCTTTTCTTGAATTTGTGCGTATTATAAGCTCGACAGGCCTGGTGAATGTGAGGGTTGTTGATCCGCTTCCGAAGCTGAAGCATTTAGAGATATCCTGCTGCTATGAATTGGAAGTTTTAGATATTTCTTCTGCCCCAAATCTCACGACACTGATATACGGTGGACCACTAGAAGCTTGGCTTTGTTTTAGGAACATTCCCAATCTGTCCCATGTATCACTCGAAGGGTTTTACTGCAGTGACATGATTTGGAGATTCGACCAGCTACCTGTTGCACTCTCTCAGATAAAAAGGCTTGAATTGGTCTTGGATACAGAGATGCATCCCAAGTTTCCTAAGTTGTTCCCGGAGTTAAAGAATGTGAAGGAATTGGACCTGCACTTGAGAGCATTTGGTGATTACAGTCTCCTTTCTTGCACTTCGGTCATAGAGGCATGCCCAAAGATGTATAGATTTTCCATGCAGTTGGACTGGCTGGGGTTACCTGAAGAGCAGCAACGAGTGATTGTGCAGACAAAAAAATGCAGTATGGAGATGAAGTGCCTAAAAGTTGTGGAATTGAGGTACTTTCGTGGGAGTAGAATATACATGGAGCTAGCTACCTGTCTACTTTCAAGTGCTCCGTTTGTTGAGAAGATAATAGCTGATACTCGCAATCCTTATGTGTTGGGATCATCCCCCTGTCTCCAATTGGACGAGGAGACTGTGTTGTCTTCTAAAGAGTGTGTGAAGCGGCTGGCTGCAGAACTCTCTCCTACGGTCGAGTTGGTAATACTCTGA

Network for GWHGAAZE031285

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	26	60	2.00E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.190
	SRR3591706	second leaf	1.455
	SRR3591707	mature leaf	3.034
	SRR3591708	Shoot apex	4.269
	SRR3591709	Stem	5.499
	SRR3591710	White floral bud	10.206
	SRR3591711	White flower	9.402
	SRR3591712	Green floral bud	4.931
	SRR3591713	Yellow flower	4.738
SRP173429	SRR8316895	Juvenile bud stage	1.705
	SRR8316896	Juvenile bud stage	2.435
	SRR8316897	Juvenile bud stage	1.195
	SRR8316894	Third green stage	1.430
	SRR8316900	Third green stage	1.618
	SRR8316901	Third green stage	2.165
	SRR8316898	Complete white stage	1.184
	SRR8316899	Complete white stage	4.800
	SRR8316903	Complete white stage	3.245
	SRR8316902	Silver flowering stage	1.981
	SRR8316904	Silver flowering stage	3.133
	SRR8316905	Silver flowering stage	1.449
	SRR8316906	Gold flowering stage	2.419
	SRR8316907	Gold flowering stage	2.647
	SRR8316908	Gold flowering stage	6.940
SRP132670	SRR6706286	Control	1.996
	SRR6706287	Light intensity 50%	2.041
	SRR6706288	Light intensity 20%	2.321
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.460
	CNS0095593	Slightly white alabastrum(diploid) 2	4.940
	CNS0095594	Slightly white alabastrum(diploid) 3	5.550
	CNS0095595	Whole white alabastrum(diploid) 2	2.987
	CNS0095596	Whole white alabastrum(diploid) 3	1.845
	CNS0095597	Whole white alabastrum(diploid) 4	4.227
	CNS0095598	Silvery flower (diploied) 1	5.766
	CNS0095599	Silvery flower (diploied) 2	5.884
	CNS0095600	Silvery flower (diploied) 3	9.577
	CNS0095601	Golden flower (diploid) 1	5.702
	CNS0095602	Golden flower (diploid) 2	5.449
	CNS0095603	Golden flower (diploid) 3	5.644
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.707
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.166
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.887
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.910
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.816
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.638
	CNS0095610	Silvery flower (tetraploid) 1	10.436
	CNS0095611	Silvery flower (tetraploid) 2	16.624
	CNS0095612	Silvery flower (tetraploid) 3	95.663
	CNS0095613	Golden flower (tetraploid) 1	29.883
	CNS0095614	Golden flower (tetraploid) 2	8.238
	CNS0095615	Golden flower (tetraploid) 3	15.462
CRA001975	CRR073297	Stem 1	2.769
	CRR073298	Stem 2	2.049
	CRR073299	Stem 3	1.306
	CRR073300	Leaf 1	2.184
	CRR073301	Leaf 2	2.097
	CRR073302	Leaf 3	1.631
	CRR073303	Juvenile bud 1	2.286
	CRR073304	Juvenile bud 2	0.757
	CRR073305	Juvenile bud 3	1.839
	CRR073306	Third green 1	6.132
	CRR073307	Third green 2	4.327
	CRR073308	Third green 3	5.329
	CRR073309	Second white 1	3.056
	CRR073310	Second white 2	4.824
	CRR073311	Second white 3	3.841
	CRR073312	Silver flowering 1	3.473
	CRR073313	Silver flowering 2	1.104
	CRR073314	Silver flowering 3	3.301
	CRR073315	Gold flowering 1	1.634
	CRR073316	Gold flowering 2	2.679
	CRR073317	Gold flowering 3	0.931
	CRR073318	Tawny withering 1	2.186
	CRR073319	Tawny withering 2	2.474
	CRR073320	Tawny withering 3	2.393