Detail information of GWHGAAZE031288


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010037474.15.72696E-27PREDICTED: putative F-box/LRR-repeat protein At5g02700 [Eucalyptus grandis]
Swissprottr|Q84W80|FBL42_ARATH1E-10F-box/LRR-repeat protein At3g03360
trEMBLtr|A0A059A618|A0A059A618_EUCGR2E-27Uncharacterized protein {ECO:0000313|EMBL:KCW49184.1}
TAIR10AT3G03360.10.00001F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5660128556603189+
GWHAAZE00000009mRNA5660128556603189+
GWHAAZE00000009exon5660128556601397+
GWHAAZE00000009exon5660266156603189+
GWHAAZE00000009CDS5660128556601397+
GWHAAZE00000009CDS5660266156603189+
Transcript Sequence

Network for GWHGAAZE031288

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.019
SRR3591706second leaf0.987
SRR3591707mature leaf1.387
SRR3591708Shoot apex2.764
SRR3591709Stem1.420
SRR3591710White floral bud1.860
SRR3591711White flower0.972
SRR3591712Green floral bud1.397
SRR3591713Yellow flower0.237
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.083
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.043
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.001
SRR6706287Light intensity 50%0.040
SRR6706288Light intensity 20%0.012
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.122
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.336
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.948
CNS0095605Slightly white alabastrum(tetraploid) 20.548
CNS0095606Slightly white alabastrum(tetraploid) 31.380
CNS0095607Whole white alabastrum(tetraploid) 11.156
CNS0095608Whole white alabastrum(tetraploid) 20.761
CNS0095609Whole white alabastrum(tetraploid) 31.269
CNS0095610Silvery flower (tetraploid) 12.042
CNS0095611Silvery flower (tetraploid) 21.616
CNS0095612Silvery flower (tetraploid) 33.226
CNS0095613Golden flower (tetraploid) 11.215
CNS0095614Golden flower (tetraploid) 21.099
CNS0095615Golden flower (tetraploid) 31.389
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.093
CRR073299Stem 30.000
CRR073300Leaf 10.000
CRR073301Leaf 20.000
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.010
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000