Gene detail

Detail information of GWHGAAZE031289

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002513467.1	1.3363E-65	ubiquitin-protein ligase, putative [Ricinus communis]
Swissprot	tr\|Q84W80\|FBL42_ARATH	9E-18	F-box/LRR-repeat protein At3g03360
trEMBL	tr\|B9RI98\|B9RI98_RICCO	5E-66	Ubiquitin-protein ligase, putative {ECO:0000313\|EMBL:EEF48870.1}
TAIR10	AT3G03360.1	2E-14	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	56635625	56637400	+
GWHAAZE00000009	mRNA	56635625	56637400	+
GWHAAZE00000009	exon	56635625	56635776	+
GWHAAZE00000009	exon	56635905	56636741	+
GWHAAZE00000009	exon	56636869	56637015	+
GWHAAZE00000009	exon	56637086	56637400	+
GWHAAZE00000009	five_prime_UTR	56635625	56635737	+
GWHAAZE00000009	CDS	56635738	56635776	+
GWHAAZE00000009	CDS	56635905	56636741	+
GWHAAZE00000009	CDS	56636869	56637015	+
GWHAAZE00000009	CDS	56637086	56637400	+

Transcript Sequence
>GWHTAAZE031323 ATTTTGTAACTCTTGCTACCTTTTTTTGCAGGTTACAATAACTCATTATAAGGAATAATTCCTTTTATACAATCAGATCAGTAGGGGCTGTTCGGTTTAGAGCAATCTATCTAATGGTGAAAAGTTTGAATCTCACTTCTAAATTACAGAAGTGTAGTAGGAGCAAAGATGTGTCTTTGCCTGATCGGATTAGTGAATTGCCCGAAGAAATTCTTGTCAGTATTTTATCCCTCTTGACGCTGAGAGAAGCTGCGCGTACCAGTGTTCTCTCTCGTAGATGGAAGAACTTGTGGACATTTATGACTGGTAGCTTGGACTTTGAACTTGTGGATCAAGAGATGGCAACCTACTTAAGCAGTGTGAACAAAATCTTGAACTCGCACCAGGGTGCCACCATCGATGAATTTAGAGTCAAATTCGATTGGCAGACAAGTGCTAGATCAGATATTGATAGTTGGCTTAACTTTGCCCTACATAAGAGAGTGCAAAGGCTTGAACTAAACTTGGGCGGAGTGAGAGCAAGCTGGGACGACCGCTACCCTTTTCTGGCGTCATCATCTCTTGGCTCGAATAACAACAACAGTAAAAATTTCAGTTGCTTGAGAAGCCTGAATTTGAACCATGTAGATGTGAGTGGAGAAGTTCTCGTATACCTCTTGTCGAACTGCCTTTTTCTTGAATTTGTGCGAATTTTAAGCTCGCCAGGCCTGGTGGACGTGAGAGTTGTTGATCCGCTTCCCAAGCTGAAGCATTTGGAGATAGCTTACTGCCATGAATTGGAAGTTTTAGATATTTCTTCTGCCCCAAATCTCACGACACTGATATATGGTGGTGGACTACTACGAGCTTCGCTTTGTTTTAGGAACATTCCCAATCTGTCCCATGTATCACTCGGAGGGTTTTACTGCAGTGACATGATTTGGAGATTCGACCAGATACCTGTTGCTCTCTCTCAGATAAAGAAGCTTGAATTGATCTTGACTACCGAGATGCATCCCAAGTTTCCTAAGTTGTTCCCCGAGTTAAAGAATGTGAAGGAATTGCACCTGCACCTGAAAGCATTTGGTGATTACAGTCTCCTTTCTTGCACTTCTGTCATAGAGGCATGCCCAAAGTTGTATAGATTTTCCATGCAGTTGAACTGGCTGGGGTTACCCGAAGAGCAACAACGAGTGGTTGTGCAGACGAAAAAATGCAGTATGGAGATGAAGTGCCTCAAAGTAGTGGAATTGAGGTACTTTCGTAGGAGTAGACTATTCATGGAGCTAGCTACCTGTCTACTCTCAAGCGCTCCCTTTGTTGAGAAGATAATAGCAGACACTCGCAATCCTTATGCGTTGGGATCCTCCCCCTGTCTCCAATTGGACGAGGAGACAGTCTTGTCTTCTAAAGAGTGTGCGAGGCGGCTCGCTGCAGAACTCTCTCCTACTGCCGAGTTGGTAATATTCTGA

Network for GWHGAAZE031289

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	25	60	1.20E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.977
	SRR3591706	second leaf	9.485
	SRR3591707	mature leaf	5.916
	SRR3591708	Shoot apex	11.489
	SRR3591709	Stem	7.352
	SRR3591710	White floral bud	6.558
	SRR3591711	White flower	7.140
	SRR3591712	Green floral bud	7.230
	SRR3591713	Yellow flower	6.228
SRP173429	SRR8316895	Juvenile bud stage	1.372
	SRR8316896	Juvenile bud stage	1.711
	SRR8316897	Juvenile bud stage	1.139
	SRR8316894	Third green stage	0.959
	SRR8316900	Third green stage	1.458
	SRR8316901	Third green stage	1.569
	SRR8316898	Complete white stage	0.245
	SRR8316899	Complete white stage	1.589
	SRR8316903	Complete white stage	0.602
	SRR8316902	Silver flowering stage	0.182
	SRR8316904	Silver flowering stage	0.259
	SRR8316905	Silver flowering stage	0.095
	SRR8316906	Gold flowering stage	0.792
	SRR8316907	Gold flowering stage	0.460
	SRR8316908	Gold flowering stage	0.243
SRP132670	SRR6706286	Control	1.499
	SRR6706287	Light intensity 50%	1.056
	SRR6706288	Light intensity 20%	1.308
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.056
	CNS0095593	Slightly white alabastrum(diploid) 2	1.853
	CNS0095594	Slightly white alabastrum(diploid) 3	2.689
	CNS0095595	Whole white alabastrum(diploid) 2	1.361
	CNS0095596	Whole white alabastrum(diploid) 3	1.539
	CNS0095597	Whole white alabastrum(diploid) 4	1.464
	CNS0095598	Silvery flower (diploied) 1	1.719
	CNS0095599	Silvery flower (diploied) 2	0.613
	CNS0095600	Silvery flower (diploied) 3	0.562
	CNS0095601	Golden flower (diploid) 1	1.158
	CNS0095602	Golden flower (diploid) 2	0.152
	CNS0095603	Golden flower (diploid) 3	0.705
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.083
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.797
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.461
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.664
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.033
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.028
	CNS0095610	Silvery flower (tetraploid) 1	0.555
	CNS0095611	Silvery flower (tetraploid) 2	0.414
	CNS0095612	Silvery flower (tetraploid) 3	0.951
	CNS0095613	Golden flower (tetraploid) 1	0.133
	CNS0095614	Golden flower (tetraploid) 2	0.299
	CNS0095615	Golden flower (tetraploid) 3	0.373
CRA001975	CRR073297	Stem 1	2.273
	CRR073298	Stem 2	2.149
	CRR073299	Stem 3	1.248
	CRR073300	Leaf 1	1.784
	CRR073301	Leaf 2	1.996
	CRR073302	Leaf 3	1.929
	CRR073303	Juvenile bud 1	0.876
	CRR073304	Juvenile bud 2	0.186
	CRR073305	Juvenile bud 3	0.722
	CRR073306	Third green 1	0.210
	CRR073307	Third green 2	0.565
	CRR073308	Third green 3	0.135
	CRR073309	Second white 1	0.140
	CRR073310	Second white 2	0.495
	CRR073311	Second white 3	0.103
	CRR073312	Silver flowering 1	0.193
	CRR073313	Silver flowering 2	0.342
	CRR073314	Silver flowering 3	0.200
	CRR073315	Gold flowering 1	1.267
	CRR073316	Gold flowering 2	5.468
	CRR073317	Gold flowering 3	0.739
	CRR073318	Tawny withering 1	0.475
	CRR073319	Tawny withering 2	1.587
	CRR073320	Tawny withering 3	0.883