Detail information of GWHGAAZE031293


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006445301.12.85628E-98hypothetical protein CICLE_v10021976mg [Citrus clementina]
Swissprottr|O22151|GOS12_ARATH1E-92Golgi SNAP receptor complex member 1-2
trEMBLtr|A0A067HCZ9|A0A067HCZ9_CITSI1E-98Golgi SNAP receptor complex member 1 {ECO:0000256|PIRNR:PIRNR027109}
TAIR10AT2G45200.12E-79golgi snare 12

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5672441056730263-
GWHAAZE00000009mRNA5672441056730263-
GWHAAZE00000009exon5672441056724507-
GWHAAZE00000009exon5672458956724718-
GWHAAZE00000009exon5672563356726023-
GWHAAZE00000009exon5672616156726201-
GWHAAZE00000009exon5672626056726331-
GWHAAZE00000009exon5672642356726512-
GWHAAZE00000009exon5672773656727932-
GWHAAZE00000009exon5673001456730263-
GWHAAZE00000009five_prime_UTR5673015656730263-
GWHAAZE00000009CDS5673001456730155-
GWHAAZE00000009CDS5672773656727932-
GWHAAZE00000009CDS5672642356726512-
GWHAAZE00000009CDS5672626056726331-
GWHAAZE00000009CDS5672616156726201-
GWHAAZE00000009CDS5672563356726023-
GWHAAZE00000009CDS5672458956724718-
GWHAAZE00000009CDS5672441056724507-
Transcript Sequence

Network for GWHGAAZE031293

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12352.9V-SNARE_C3113618.20E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08495GOSR1, GOS1 SNARE interactions in vesicular transport map04130

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.019
SRR3591706second leaf11.828
SRR3591707mature leaf7.143
SRR3591708Shoot apex16.669
SRR3591709Stem20.551
SRR3591710White floral bud10.040
SRR3591711White flower7.570
SRR3591712Green floral bud12.887
SRR3591713Yellow flower5.747
SRP173429 SRR8316895Juvenile bud stage 7.740
SRR8316896Juvenile bud stage 13.276
SRR8316897Juvenile bud stage 5.809
SRR8316894Third green stage 5.787
SRR8316900Third green stage 17.659
SRR8316901Third green stage 16.002
SRR8316898Complete white stage 6.890
SRR8316899Complete white stage 18.812
SRR8316903Complete white stage 11.603
SRR8316902Silver flowering stage5.412
SRR8316904Silver flowering stage6.763
SRR8316905Silver flowering stage3.254
SRR8316906Gold flowering stage 9.429
SRR8316907Gold flowering stage 9.734
SRR8316908Gold flowering stage 11.032
SRP132670SRR6706286Control9.697
SRR6706287Light intensity 50%9.544
SRR6706288Light intensity 20%11.631
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.323
CNS0095593Slightly white alabastrum(diploid) 211.709
CNS0095594Slightly white alabastrum(diploid) 39.539
CNS0095595Whole white alabastrum(diploid) 211.429
CNS0095596Whole white alabastrum(diploid) 39.421
CNS0095597Whole white alabastrum(diploid) 48.874
CNS0095598Silvery flower (diploied) 110.679
CNS0095599Silvery flower (diploied) 29.384
CNS0095600Silvery flower (diploied) 39.255
CNS0095601Golden flower (diploid) 17.020
CNS0095602Golden flower (diploid) 27.835
CNS0095603Golden flower (diploid) 38.189
CNS0095604Slightly white alabastrum(tetraploid) 112.139
CNS0095605Slightly white alabastrum(tetraploid) 210.190
CNS0095606Slightly white alabastrum(tetraploid) 319.089
CNS0095607Whole white alabastrum(tetraploid) 18.206
CNS0095608Whole white alabastrum(tetraploid) 27.889
CNS0095609Whole white alabastrum(tetraploid) 312.355
CNS0095610Silvery flower (tetraploid) 18.744
CNS0095611Silvery flower (tetraploid) 28.607
CNS0095612Silvery flower (tetraploid) 37.876
CNS0095613Golden flower (tetraploid) 14.862
CNS0095614Golden flower (tetraploid) 28.943
CNS0095615Golden flower (tetraploid) 33.590
CRA001975CRR073297Stem 118.689
CRR073298Stem 216.025
CRR073299Stem 312.254
CRR073300Leaf 116.600
CRR073301Leaf 216.672
CRR073302Leaf 317.458
CRR073303Juvenile bud 119.639
CRR073304Juvenile bud 214.588
CRR073305Juvenile bud 310.732
CRR073306Third green 16.007
CRR073307Third green 26.387
CRR073308Third green 37.198
CRR073309Second white 11.793
CRR073310Second white 26.440
CRR073311Second white 33.725
CRR073312Silver flowering 11.144
CRR073313Silver flowering 21.231
CRR073314Silver flowering 32.117
CRR073315Gold flowering 16.336
CRR073316Gold flowering 27.326
CRR073317Gold flowering 34.379
CRR073318Tawny withering 119.608
CRR073319Tawny withering 211.728
CRR073320Tawny withering 319.387