Gene detail

Detail information of GWHGAAZE031296

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009766156.1	0	PREDICTED: pectinesterase 2-like [Nicotiana sylvestris]
COG	YP_006407803.1	5E-52	pectin methylesterase
Swissprot	tr\|O04887\|PME2_CITSI	0	Pectinesterase 2 (Precursor)
trEMBL	tr\|F6I390\|F6I390_VITVI	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT2G45220.1	0	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	56761420	56764249	-
GWHAAZE00000009	mRNA	56761420	56764249	-
GWHAAZE00000009	exon	56761420	56762108	-
GWHAAZE00000009	exon	56763376	56764249	-
GWHAAZE00000009	CDS	56763376	56764249	-
GWHAAZE00000009	CDS	56761420	56762108	-

Transcript Sequence
>GWHTAAZE031330 ATGGCTCTTCAACTTCTCACACCATTTCTCTTTCTATCTCTCCTCCTCTTTCTCTCTCCTACCATTTTTGCTTACACACAATTCGACATTAAATCATGGTGCACCCAAACACCACACCCGAAACCATGTGAGTACTTCTTGACCCAAAACCCTAACTATGGTCCGATCAAACAAAAACCAGACTTCTTAAAAGCGTCGCTAAAGCTAGCCCTAGACCGGGCTTTGAAAGCAAATGTCAAGACCAAAACCCTTGGCTTGAAATGTCGAAACGAGCGCGAAAAAGCTGCTTGGGCAGATTGTTTAGAGCTCTACGAGGACACAATCTCGAGGCTCAACAAAACCGCGGACCTTTTGACCAAGTGCTCTCTGGCCGACTCGCAAACCTGGCTCAGCTCGGCCCTAACCAACCTCGAGACCTGTCGAGCCGGGTTCTTAGAGCTAGGGGTGAGTGATTACATATTGCCCTTGATGTCCAACAATGTGTCCATGCTTATTAGCAACACTTTGGCAATGAACAAGGGCAACAGGCCGGATAATGGGTCGGGTCATAAAAATGGGTTCCCGAGTTGGGTCCGACCTGGTGACCGGAGACTTTTGCAGGCAGGTTTGCCAGCAGCTCAGGCAAACGTGGTGGTGGCTCAAGACGGGTCGGGGAATTATAAGACAGTGGGGGAGGCGGTGGCAGCGGCGGGTAAGAGGGCGGGGAGTGGGAGGTATGTGATATATATTAAGGCAGGGACTTATAGGGAGAACGTGGAGGTGGGTACAAAGTTGAAGAATATTATGTTTTTGGGTGATGGTATTGGGAGGACTATTATAACCGGTAGTAGAAGTGTTGGTGGTGGCACCACCACCTTCCAATCGGCCACCGTTGCTGTTGTGGGAGACGGATTCATAGCCCGGGGCATAACATTCCGCAACACCGCGGGCCCACAGAACCACCAGGCCGTGGCCCTCCGGTCCGGCTCCGACCTCTCGGTATTTTACCAATGTTCCTTCGAAGGCTATCAAGACACCCTCTACGTTTACTCAGACCGCCAATTTTATAAAAACTGTGACATTTACGGTACAGTCGACTTCATTTTTGGCAACGCTGCCGTAGTTTTCCAAAATTGCAATATTTACCCCCGCAACCCGCCCAACAAAACCAACACCATCACAGCCCAGGGCCGAACCGACGCAAATCAGAACACAGGTATTTCGATTCACAACTGTCGGGTCACCCCCGCCTCGGATCTCAAATCGAATCAAGGGTCCGTTAGGACTTATTTGGGTCGGCCCTGGAAGCAGTATTCGAGGGTGGTGTTTATGAAGACGGATATGGATAGTTTTATTGACCCGGCAGGTTGGTTGCCATGGAGTGGGAATTTTGCTTTAAGTACTTTGTATTATGGGGAGTATATGAATACTGGTCCGGGTTCAGCTACAGGTAGAAGGGTGCAGTGGGGCGGGTACCGGGTTATAACGAGTGCGGCGGAGGCGGGGAAGTTTACGGTTGGGAGTTTTATTGCAGGGGGGTCTTGGTTGCCGGCTACCAATGTGCCATTTACTGCAGGGCTTTGA

Network for GWHGAAZE031296

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	30	171	4.40E-28
PF01095.20	Pectinesterase	209	505	3.00E-142

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity
GO:0004857	molecular_function	enzyme inhibitor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.060
	SRR3591706	second leaf	0.161
	SRR3591707	mature leaf	0.052
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	3.363
	SRR3591710	White floral bud	0.607
	SRR3591711	White flower	0.421
	SRR3591712	Green floral bud	0.871
	SRR3591713	Yellow flower	35.114
SRP173429	SRR8316895	Juvenile bud stage	0.050
	SRR8316896	Juvenile bud stage	0.188
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.037
	SRR8316900	Third green stage	0.111
	SRR8316901	Third green stage	0.194
	SRR8316898	Complete white stage	0.469
	SRR8316899	Complete white stage	2.667
	SRR8316903	Complete white stage	0.306
	SRR8316902	Silver flowering stage	0.019
	SRR8316904	Silver flowering stage	0.208
	SRR8316905	Silver flowering stage	0.044
	SRR8316906	Gold flowering stage	1.529
	SRR8316907	Gold flowering stage	0.673
	SRR8316908	Gold flowering stage	1.406
SRP132670	SRR6706286	Control	0.491
	SRR6706287	Light intensity 50%	0.429
	SRR6706288	Light intensity 20%	0.617
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.043
	CNS0095593	Slightly white alabastrum(diploid) 2	0.058
	CNS0095594	Slightly white alabastrum(diploid) 3	0.162
	CNS0095595	Whole white alabastrum(diploid) 2	0.100
	CNS0095596	Whole white alabastrum(diploid) 3	0.154
	CNS0095597	Whole white alabastrum(diploid) 4	0.072
	CNS0095598	Silvery flower (diploied) 1	0.004
	CNS0095599	Silvery flower (diploied) 2	0.262
	CNS0095600	Silvery flower (diploied) 3	0.045
	CNS0095601	Golden flower (diploid) 1	0.837
	CNS0095602	Golden flower (diploid) 2	1.998
	CNS0095603	Golden flower (diploid) 3	1.581
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.092
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.018
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.038
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.009
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.187
	CNS0095610	Silvery flower (tetraploid) 1	0.098
	CNS0095611	Silvery flower (tetraploid) 2	0.340
	CNS0095612	Silvery flower (tetraploid) 3	0.044
	CNS0095613	Golden flower (tetraploid) 1	0.434
	CNS0095614	Golden flower (tetraploid) 2	0.324
	CNS0095615	Golden flower (tetraploid) 3	0.253
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.014
	CRR073299	Stem 3	0.035
	CRR073300	Leaf 1	0.224
	CRR073301	Leaf 2	0.015
	CRR073302	Leaf 3	0.080
	CRR073303	Juvenile bud 1	1.223
	CRR073304	Juvenile bud 2	1.060
	CRR073305	Juvenile bud 3	2.737
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.322
	CRR073308	Third green 3	0.292
	CRR073309	Second white 1	0.249
	CRR073310	Second white 2	0.313
	CRR073311	Second white 3	0.259
	CRR073312	Silver flowering 1	3.397
	CRR073313	Silver flowering 2	5.206
	CRR073314	Silver flowering 3	6.207
	CRR073315	Gold flowering 1	0.062
	CRR073316	Gold flowering 2	0.017
	CRR073317	Gold flowering 3	0.340
	CRR073318	Tawny withering 1	7.526
	CRR073319	Tawny withering 2	13.819
	CRR073320	Tawny withering 3	5.588