Gene detail

Detail information of GWHGAAZE031302

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010264165.1	0	PREDICTED: 3-phosphoshikimate 1-carboxyvinyltransferase 2 [Nelumbo nucifera]
COG	YP_008545903.1	2E-160	3-phosphoshikimate 1-carboxyvinyltransferase
Swissprot	tr\|P11043\|AROA_PETHY	0	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic (Precursor)
trEMBL	tr\|Q1M157\|Q1M157_CAMAC	0	3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256\|RuleBase:RU000531}
TAIR10	AT2G45300.1	0	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	56844586	56852244	+
GWHAAZE00000009	mRNA	56844586	56852244	+
GWHAAZE00000009	exon	56844586	56844921	+
GWHAAZE00000009	exon	56846251	56846495	+
GWHAAZE00000009	exon	56846653	56846806	+
GWHAAZE00000009	exon	56849276	56849490	+
GWHAAZE00000009	exon	56849571	56849688	+
GWHAAZE00000009	exon	56850796	56851006	+
GWHAAZE00000009	exon	56851578	56851639	+
GWHAAZE00000009	exon	56852026	56852244	+
GWHAAZE00000009	CDS	56844586	56844921	+
GWHAAZE00000009	CDS	56846251	56846495	+
GWHAAZE00000009	CDS	56846653	56846806	+
GWHAAZE00000009	CDS	56849276	56849490	+
GWHAAZE00000009	CDS	56849571	56849688	+
GWHAAZE00000009	CDS	56850796	56851006	+
GWHAAZE00000009	CDS	56851578	56851639	+
GWHAAZE00000009	CDS	56852026	56852244	+

Transcript Sequence
>GWHTAAZE031336 ATGGCGCAGGTTAGCAACTTGGCCAAGGGGGTCCAAAACCCGCATTTACGTCCCAATTTGCCCAAAATCAGCAACCCCAAATCTCTAAGTTCTGTAACTTTTGGATCATCAAAGCTAAGAGATTTCTCAAGTTTGAATCACAGAACTAGTGTTGGTTTCATTAACCGTTCGGTTAAGGTTCCACTAAGGGTTTCAGCTTCAATTGCCACCGCCGAGAAGCCGTCAACGGTACCGGAGATTACTTTGCAACCTATCAAAGATATTTCCGGCACCGTTGAATTGCCGGGATCCAAGTCTCTTTCCAATCGTATTCTACTTCTTGCTGCTCTCTCCGAGGGAACAACTGTTGTAGACAACTTATTGAACAGTGATGATGTCCATTACATGCTTGGTGCTTTGAAAACACTTGGGCTACACGTTGAAGAAGATAATGCAAGCAAAAGGGCAATTGTAGAAGGTTGTGGCGGTATATTTCCAGTGGGTAAAGAATCTACGGAGGAAATTCAACTTTTCCTAGGGAATGCAGGTACAGCAATGCGTCCATTAACTGCTGCTGTTACTGCTGCTGGGGGAAATTCAAGCTATGTACTTGATGGGGTACCCCGGATGAGAGAGAGGCCAATTGGTGATTTGGTGACAGGTCTTAAGCAGCTTGGTGCAGATGTTGATTGTTTTCTTGGAACAAACTGCCCCCCTGTTCGCATAGCTGGAAAAGGAGGCCTTCCCGGGGGAAAGGTTAAGCTTTCTGGATCAGTTAGTAGTCAATACTTGACAGCTTTGCTCATGGCAGCTCCTTTAGCTCTAGGAGACATAGAAATTGAAATTATAGATAAACTCATTTCTGTACCTTACGTTGAGATGACCCTTAAGCTGATGGAACGCTTTGGTGTCACTGTTGAACATAGTGCCAGCTGGGACAGGTTCTTGGTCAAAGGAGGTCAAAAGTACAAGTCTCCTGGAAAGGCTTATGTAGAAGGTGATGCTTCTAGTGCTAGTTACTTTTTAGCTGGTGCAGCTGTCACTGGTGGGACCGTTACTGTTGAAGGTTGTGGGACGAGCAGTTTACAGGGGGATGTAAAATTTGCTGAGGTTCTTGGACAAATGGGTGCTGATGTAACGTGGACAGAGAACAGTGTCACTGTGAGAGGGCCACCTCGTAATTCTCCTGGAAAGAAACACTTGCATGCGGTTAATGTAAACATGAACAAAATGCCAGATGTCGCCATGACACTTGCTGTAGTTGCTCTTTTTGCTGATGGTCCCACGACCATAAGAGACGTGGCCAGCTGGAGAGTGAAGGAAACCGAACGAATGATTGCGATTTGTACAGAACTCAGAAAGCTGGGAGCAACAGTCGAAGAGGGGTCAGATTACTGTGTGATCACCCCACCAGATAAATTAACGGTGACTTCAATAGACACGTACGATGATCATCGTATGGCTATGGCCTTCTCTCTTGCTGCGTGCGCAGATGTTCCCGTGACCATTAAAGATCCCGGTTGCACTAGAAAAACCTTCCCCGATTATTTTGAAGTACTCGACAAGTTTTCCAAGCATTGA

Network for GWHGAAZE031302

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00275.21	EPSP_synthase	83	513	4.70E-147

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00800	aroA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0009073	biological_process	aromatic amino acid family biosynthetic process
GO:0016765	molecular_function	transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0003866	molecular_function	3-phosphoshikimate 1-carboxyvinyltransferase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	162.839
	SRR3591706	second leaf	94.693
	SRR3591707	mature leaf	71.868
	SRR3591708	Shoot apex	105.038
	SRR3591709	Stem	214.012
	SRR3591710	White floral bud	100.820
	SRR3591711	White flower	176.043
	SRR3591712	Green floral bud	122.325
	SRR3591713	Yellow flower	195.202
SRP173429	SRR8316895	Juvenile bud stage	80.425
	SRR8316896	Juvenile bud stage	102.600
	SRR8316897	Juvenile bud stage	39.475
	SRR8316894	Third green stage	37.858
	SRR8316900	Third green stage	133.105
	SRR8316901	Third green stage	126.656
	SRR8316898	Complete white stage	30.388
	SRR8316899	Complete white stage	105.186
	SRR8316903	Complete white stage	47.513
	SRR8316902	Silver flowering stage	70.060
	SRR8316904	Silver flowering stage	75.759
	SRR8316905	Silver flowering stage	39.714
	SRR8316906	Gold flowering stage	237.734
	SRR8316907	Gold flowering stage	198.578
	SRR8316908	Gold flowering stage	278.444
SRP132670	SRR6706286	Control	128.895
	SRR6706287	Light intensity 50%	131.411
	SRR6706288	Light intensity 20%	149.744
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	90.207
	CNS0095593	Slightly white alabastrum(diploid) 2	91.700
	CNS0095594	Slightly white alabastrum(diploid) 3	89.971
	CNS0095595	Whole white alabastrum(diploid) 2	76.282
	CNS0095596	Whole white alabastrum(diploid) 3	74.903
	CNS0095597	Whole white alabastrum(diploid) 4	67.530
	CNS0095598	Silvery flower (diploied) 1	85.285
	CNS0095599	Silvery flower (diploied) 2	92.146
	CNS0095600	Silvery flower (diploied) 3	88.980
	CNS0095601	Golden flower (diploid) 1	74.202
	CNS0095602	Golden flower (diploid) 2	111.695
	CNS0095603	Golden flower (diploid) 3	109.753
	CNS0095604	Slightly white alabastrum(tetraploid) 1	68.399
	CNS0095605	Slightly white alabastrum(tetraploid) 2	58.449
	CNS0095606	Slightly white alabastrum(tetraploid) 3	123.787
	CNS0095607	Whole white alabastrum(tetraploid) 1	46.654
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.437
	CNS0095609	Whole white alabastrum(tetraploid) 3	98.256
	CNS0095610	Silvery flower (tetraploid) 1	116.434
	CNS0095611	Silvery flower (tetraploid) 2	95.482
	CNS0095612	Silvery flower (tetraploid) 3	91.167
	CNS0095613	Golden flower (tetraploid) 1	124.527
	CNS0095614	Golden flower (tetraploid) 2	183.381
	CNS0095615	Golden flower (tetraploid) 3	70.619
CRA001975	CRR073297	Stem 1	141.623
	CRR073298	Stem 2	133.245
	CRR073299	Stem 3	167.629
	CRR073300	Leaf 1	146.851
	CRR073301	Leaf 2	152.632
	CRR073302	Leaf 3	168.942
	CRR073303	Juvenile bud 1	148.844
	CRR073304	Juvenile bud 2	136.583
	CRR073305	Juvenile bud 3	151.057
	CRR073306	Third green 1	56.969
	CRR073307	Third green 2	40.411
	CRR073308	Third green 3	47.321
	CRR073309	Second white 1	100.717
	CRR073310	Second white 2	94.582
	CRR073311	Second white 3	89.229
	CRR073312	Silver flowering 1	169.219
	CRR073313	Silver flowering 2	210.468
	CRR073314	Silver flowering 3	226.843
	CRR073315	Gold flowering 1	62.276
	CRR073316	Gold flowering 2	77.743
	CRR073317	Gold flowering 3	62.017
	CRR073318	Tawny withering 1	141.657
	CRR073319	Tawny withering 2	143.191
	CRR073320	Tawny withering 3	148.322