Gene detail

Detail information of GWHGAAZE031303

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007052086.1	0	UDP-D-glucuronate 4-epimerase 3 [Theobroma cacao]
COG	YP_003710181.1	6E-114	NAD-dependent epimerase/dehydratase
Swissprot	tr\|O81312\|GAE3_ARATH	0	UDP-glucuronate 4-epimerase 3
trEMBL	tr\|A0A061E1X2\|A0A061E1X2_THECC	0	UDP-D-glucuronate 4-epimerase 3 {ECO:0000313\|EMBL:EOX96243.1}
TAIR10	AT4G00110.1	0	UDP-D-glucuronate 4-epimerase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	56859589	56860839	+
GWHAAZE00000009	mRNA	56859589	56860839	+
GWHAAZE00000009	exon	56859589	56860839	+
GWHAAZE00000009	CDS	56859589	56860839	+

Transcript Sequence
>GWHTAAZE031337 ATGGAGAAATCAATCCACCGGCTGAGGTGGCACTCTTCTCTAGCGAAACTCACATTCTGGTCATTCGTATTTTTAGGGCTGATATTCGTCATCTTTTTCCGATCCCCTTCATCATCAGCATCATTGCCGTCAGATCTGTCGCGACGGTCACTCCGCACGAGCTCGTGGGGTGGACCGGCGTGGGAGAAGAGGGTCCGGACATCCTCAAAGGTCCGGTCACGGCATGGGATCTCCGTTCTCGTAACCGGGGCTGCCGGATTTGTCGGGACCCACGTCTCCTCAGCACTAAACCGCCGCGGCGATGGTGTTTTAGGGCTGGATAATTTTAATGACTATTATGATCCCTCTCTGAAGAGGGCTAGACAAGCCCTTCTTGAGAGAAGTGGGATCTTCATAGTTGAAGGTGACATAAATGACTTTGCATTATTAAAAAAGTTATTTGATGTTGTACCTTTTACACATGTTATGCATTTAGCTGCACAAGCTGGTGTTAGGTATGCAATGGAGAATCCAAGCTCTTATGTGCATAGTAATATTGGTGGGCTTGTTAATGTTCTTGAAGTTTGTAAATCAGCCAATCCACAGCCTGCAATTGTGTGGGCATCTTCAAGTTCTGTTTATGGACTCAATAGTAAAGTTCCCTTTTCGGAAAAAGATAGAACGGATCAACCTGCTAGTCTTTATGCAGCCACTAAAAAGGCTGGTGAAGAGATTGCACACACTTATAATCATATCTATGGACTTTCCCTTACCGGGTTGCGTTTCTTTACCGTTTATGGCCCTTGGGGTAGGCCAGATATGGCTTATTTCTTCTTCACAAGAGATATTTTGAAAGGAAAGCAAATCCCAATATTTGAGGCTTCGAATCATGGGACGGTTGCGAGGGATTTCACTTACGTTGATGATATTGTAAAGGGTTGTTTGGCTGCATTGGATACAGCTCAGAAAAGTACCGGTAGTGGTGGGAAGAAGAAAGGGCCTGCCCAGTTACGAGTTTTCAATTTGGGGAATACTTCACCGGTGCCAGTAACGGATCTTGTGAGTATATTGGAGAAATTGTTGAAAGTGAGAGCTAAAAGATTGATAATGAAAATGCCAAGAAATGGGGATGTGCAGTTTACACACGCAAATATAAGCTTGGCTCAAAGGGAGCTTGGGTATAAGCCCACAACGGATTTGCAGACCGGTTTGAAGAAATTCGTTCGATGGTACTTAAGTTACTATGGTTCTGGAAAGAAGAGTGACCAATGA

Network for GWHGAAZE031303

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.6	GDP_Man_Dehyd	80	399	3.30E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08679	E5.1.3.6	Metabolic pathways	map01100
K08679	E5.1.3.6	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0050662	molecular_function	coenzyme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.242
	SRR3591706	second leaf	29.363
	SRR3591707	mature leaf	19.385
	SRR3591708	Shoot apex	22.297
	SRR3591709	Stem	25.480
	SRR3591710	White floral bud	84.707
	SRR3591711	White flower	9.878
	SRR3591712	Green floral bud	69.183
	SRR3591713	Yellow flower	4.134
SRP173429	SRR8316895	Juvenile bud stage	18.679
	SRR8316896	Juvenile bud stage	19.630
	SRR8316897	Juvenile bud stage	10.735
	SRR8316894	Third green stage	13.880
	SRR8316900	Third green stage	54.834
	SRR8316901	Third green stage	44.792
	SRR8316898	Complete white stage	7.386
	SRR8316899	Complete white stage	31.291
	SRR8316903	Complete white stage	11.100
	SRR8316902	Silver flowering stage	3.027
	SRR8316904	Silver flowering stage	6.347
	SRR8316905	Silver flowering stage	2.426
	SRR8316906	Gold flowering stage	5.635
	SRR8316907	Gold flowering stage	3.893
	SRR8316908	Gold flowering stage	4.159
SRP132670	SRR6706286	Control	33.240
	SRR6706287	Light intensity 50%	34.993
	SRR6706288	Light intensity 20%	36.317
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.491
	CNS0095593	Slightly white alabastrum(diploid) 2	30.170
	CNS0095594	Slightly white alabastrum(diploid) 3	27.645
	CNS0095595	Whole white alabastrum(diploid) 2	62.790
	CNS0095596	Whole white alabastrum(diploid) 3	72.156
	CNS0095597	Whole white alabastrum(diploid) 4	92.697
	CNS0095598	Silvery flower (diploied) 1	15.694
	CNS0095599	Silvery flower (diploied) 2	28.501
	CNS0095600	Silvery flower (diploied) 3	13.057
	CNS0095601	Golden flower (diploid) 1	10.663
	CNS0095602	Golden flower (diploid) 2	13.213
	CNS0095603	Golden flower (diploid) 3	10.348
	CNS0095604	Slightly white alabastrum(tetraploid) 1	46.713
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.301
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.289
	CNS0095607	Whole white alabastrum(tetraploid) 1	82.922
	CNS0095608	Whole white alabastrum(tetraploid) 2	99.773
	CNS0095609	Whole white alabastrum(tetraploid) 3	64.204
	CNS0095610	Silvery flower (tetraploid) 1	8.254
	CNS0095611	Silvery flower (tetraploid) 2	12.728
	CNS0095612	Silvery flower (tetraploid) 3	25.628
	CNS0095613	Golden flower (tetraploid) 1	4.993
	CNS0095614	Golden flower (tetraploid) 2	6.642
	CNS0095615	Golden flower (tetraploid) 3	15.696
CRA001975	CRR073297	Stem 1	20.165
	CRR073298	Stem 2	20.411
	CRR073299	Stem 3	17.882
	CRR073300	Leaf 1	37.710
	CRR073301	Leaf 2	27.854
	CRR073302	Leaf 3	29.181
	CRR073303	Juvenile bud 1	41.928
	CRR073304	Juvenile bud 2	56.856
	CRR073305	Juvenile bud 3	25.089
	CRR073306	Third green 1	20.884
	CRR073307	Third green 2	31.150
	CRR073308	Third green 3	21.481
	CRR073309	Second white 1	2.016
	CRR073310	Second white 2	6.005
	CRR073311	Second white 3	4.507
	CRR073312	Silver flowering 1	17.028
	CRR073313	Silver flowering 2	21.863
	CRR073314	Silver flowering 3	11.756
	CRR073315	Gold flowering 1	15.240
	CRR073316	Gold flowering 2	9.466
	CRR073317	Gold flowering 3	9.697
	CRR073318	Tawny withering 1	20.481
	CRR073319	Tawny withering 2	19.346
	CRR073320	Tawny withering 3	20.709