Detail information of GWHGAAZE031305


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009596116.15.95443E-72PREDICTED: 40S ribosomal protein S13-like [Nicotiana tomentosiformis]
COGYP_008432082.18E-3530S ribosomal protein S15
Swissprottr|P62302|RS13_SOYBN3E-7240S ribosomal protein S13
trEMBLtr|A0A022QWM7|A0A022QWM7_ERYGU2E-71Uncharacterized protein {ECO:0000313|EMBL:EYU31984.1}
TAIR10AT4G00100.12E-56ribosomal protein S13A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5687120256871615-
GWHAAZE00000009mRNA5687120256871615-
GWHAAZE00000009exon5687147456871615-
GWHAAZE00000009exon5687120256871389-
GWHAAZE00000009CDS5687147456871615-
GWHAAZE00000009CDS5687120256871389-
Transcript Sequence

Network for GWHGAAZE031305

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08069.13Ribosomal_S13_N1292.20E-12
PF00312.23Ribosomal_S15431031.70E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02953RP-S13e, RPS13 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf289.574
SRR3591706second leaf146.149
SRR3591707mature leaf55.164
SRR3591708Shoot apex377.908
SRR3591709Stem135.631
SRR3591710White floral bud108.639
SRR3591711White flower165.413
SRR3591712Green floral bud243.440
SRR3591713Yellow flower138.988
SRP173429 SRR8316895Juvenile bud stage 108.754
SRR8316896Juvenile bud stage 155.536
SRR8316897Juvenile bud stage 89.242
SRR8316894Third green stage 65.884
SRR8316900Third green stage 240.058
SRR8316901Third green stage 203.677
SRR8316898Complete white stage 42.860
SRR8316899Complete white stage 187.521
SRR8316903Complete white stage 65.329
SRR8316902Silver flowering stage52.233
SRR8316904Silver flowering stage44.259
SRR8316905Silver flowering stage26.107
SRR8316906Gold flowering stage 92.510
SRR8316907Gold flowering stage 81.908
SRR8316908Gold flowering stage 116.596
SRP132670SRR6706286Control184.880
SRR6706287Light intensity 50%190.251
SRR6706288Light intensity 20%210.436
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1242.030
CNS0095593Slightly white alabastrum(diploid) 2297.360
CNS0095594Slightly white alabastrum(diploid) 3244.687
CNS0095595Whole white alabastrum(diploid) 2225.300
CNS0095596Whole white alabastrum(diploid) 3256.236
CNS0095597Whole white alabastrum(diploid) 4194.472
CNS0095598Silvery flower (diploied) 1142.918
CNS0095599Silvery flower (diploied) 2138.480
CNS0095600Silvery flower (diploied) 3106.610
CNS0095601Golden flower (diploid) 1118.575
CNS0095602Golden flower (diploid) 2112.701
CNS0095603Golden flower (diploid) 3106.610
CNS0095604Slightly white alabastrum(tetraploid) 1223.261
CNS0095605Slightly white alabastrum(tetraploid) 2247.562
CNS0095606Slightly white alabastrum(tetraploid) 3262.419
CNS0095607Whole white alabastrum(tetraploid) 1143.275
CNS0095608Whole white alabastrum(tetraploid) 2126.853
CNS0095609Whole white alabastrum(tetraploid) 3209.670
CNS0095610Silvery flower (tetraploid) 1116.312
CNS0095611Silvery flower (tetraploid) 2102.031
CNS0095612Silvery flower (tetraploid) 383.096
CNS0095613Golden flower (tetraploid) 183.096
CNS0095614Golden flower (tetraploid) 2102.794
CNS0095615Golden flower (tetraploid) 373.312
CRA001975CRR073297Stem 1210.490
CRR073298Stem 2211.507
CRR073299Stem 3229.018
CRR073300Leaf 1201.740
CRR073301Leaf 2246.427
CRR073302Leaf 3253.512
CRR073303Juvenile bud 1237.173
CRR073304Juvenile bud 2185.074
CRR073305Juvenile bud 3184.068
CRR073306Third green 135.192
CRR073307Third green 242.700
CRR073308Third green 346.974
CRR073309Second white 178.856
CRR073310Second white 255.265
CRR073311Second white 330.024
CRR073312Silver flowering 153.774
CRR073313Silver flowering 274.847
CRR073314Silver flowering 345.145
CRR073315Gold flowering 1109.801
CRR073316Gold flowering 292.665
CRR073317Gold flowering 396.280
CRR073318Tawny withering 1186.183
CRR073319Tawny withering 2163.689
CRR073320Tawny withering 3210.958