Detail information of GWHGAAZE031312


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP06941.12.0799E-126unnamed protein product [Coffea canephora]
Swissprottr|Q8L7W5|SMO11_ARATH4E-107Methylsterol monooxygenase 1-1
trEMBLtr|A0A068UEL9|A0A068UEL9_COFCA8E-127Coffea canephora DH200=94 genomic scaffold, scaffold_24 {ECO:0000313|EMBL:CDP06941.1}
TAIR10AT4G12110.13E-86sterol-4alpha-methyl oxidase 1-1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5696142456962861-
GWHAAZE00000009mRNA5696142456962861-
GWHAAZE00000009exon5696142456961750-
GWHAAZE00000009exon5696253256962861-
GWHAAZE00000009CDS5696253256962861-
GWHAAZE00000009CDS5696142456961750-
Transcript Sequence

Network for GWHGAAZE031312

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04116.14FA_hydroxylase1312182.70E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14423SMO1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Steroid biosynthesismap00100

Gene Ontology

GO term OntologyName
GO:0008610biological_processlipid biosynthetic process
GO:0055114biological_processoxidation-reduction process
GO:0005506molecular_functioniron ion binding
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.212
SRR3591707mature leaf0.011
SRR3591708Shoot apex0.842
SRR3591709Stem1.201
SRR3591710White floral bud93.596
SRR3591711White flower5.540
SRR3591712Green floral bud54.642
SRR3591713Yellow flower4.753
SRP173429 SRR8316895Juvenile bud stage 3.856
SRR8316896Juvenile bud stage 6.189
SRR8316897Juvenile bud stage 3.693
SRR8316894Third green stage 2.811
SRR8316900Third green stage 30.681
SRR8316901Third green stage 28.592
SRR8316898Complete white stage 0.198
SRR8316899Complete white stage 4.803
SRR8316903Complete white stage 0.837
SRR8316902Silver flowering stage0.915
SRR8316904Silver flowering stage1.843
SRR8316905Silver flowering stage1.338
SRR8316906Gold flowering stage 0.184
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control20.392
SRR6706287Light intensity 50%20.553
SRR6706288Light intensity 20%22.114
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.171
CNS0095593Slightly white alabastrum(diploid) 210.477
CNS0095594Slightly white alabastrum(diploid) 310.937
CNS0095595Whole white alabastrum(diploid) 261.538
CNS0095596Whole white alabastrum(diploid) 374.759
CNS0095597Whole white alabastrum(diploid) 481.721
CNS0095598Silvery flower (diploied) 17.550
CNS0095599Silvery flower (diploied) 215.495
CNS0095600Silvery flower (diploied) 33.580
CNS0095601Golden flower (diploid) 16.559
CNS0095602Golden flower (diploid) 23.188
CNS0095603Golden flower (diploid) 33.386
CNS0095604Slightly white alabastrum(tetraploid) 123.773
CNS0095605Slightly white alabastrum(tetraploid) 223.620
CNS0095606Slightly white alabastrum(tetraploid) 38.576
CNS0095607Whole white alabastrum(tetraploid) 185.383
CNS0095608Whole white alabastrum(tetraploid) 2124.141
CNS0095609Whole white alabastrum(tetraploid) 353.005
CNS0095610Silvery flower (tetraploid) 12.217
CNS0095611Silvery flower (tetraploid) 210.701
CNS0095612Silvery flower (tetraploid) 323.560
CNS0095613Golden flower (tetraploid) 13.447
CNS0095614Golden flower (tetraploid) 20.879
CNS0095615Golden flower (tetraploid) 312.655
CRA001975CRR073297Stem 18.770
CRR073298Stem 210.165
CRR073299Stem 38.698
CRR073300Leaf 127.459
CRR073301Leaf 217.423
CRR073302Leaf 313.786
CRR073303Juvenile bud 133.907
CRR073304Juvenile bud 226.155
CRR073305Juvenile bud 38.359
CRR073306Third green 111.241
CRR073307Third green 210.548
CRR073308Third green 313.102
CRR073309Second white 10.328
CRR073310Second white 24.292
CRR073311Second white 32.367
CRR073312Silver flowering 111.698
CRR073313Silver flowering 29.804
CRR073314Silver flowering 36.097
CRR073315Gold flowering 110.074
CRR073316Gold flowering 27.557
CRR073317Gold flowering 34.079
CRR073318Tawny withering 115.287
CRR073319Tawny withering 213.812
CRR073320Tawny withering 317.679