Detail information of GWHGAAZE031320


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009604912.11.5575E-109PREDICTED: LOB domain-containing protein 30-like [Nicotiana tomentosiformis]
Swissprottr|O22131|LBD18_ARATH2E-81LOB domain-containing protein 18
trEMBLtr|A0A067HD70|A0A067HD70_CITSI3E-106Uncharacterized protein {ECO:0000313|EMBL:KDO85852.1}
TAIR10AT2G45420.18E-63LOB domain-containing protein 18

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5710225157107053+
GWHAAZE00000009mRNA5710225157107053+
GWHAAZE00000009exon5710225157102407+
GWHAAZE00000009exon5710295357103134+
GWHAAZE00000009exon5710666757107053+
GWHAAZE00000009CDS5710225157102407+
GWHAAZE00000009CDS5710295357103134+
GWHAAZE00000009CDS5710666757107053+
Transcript Sequence

Network for GWHGAAZE031320

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB271254.20E-38
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.904
SRR3591706second leaf2.186
SRR3591707mature leaf0.185
SRR3591708Shoot apex1.507
SRR3591709Stem12.794
SRR3591710White floral bud3.628
SRR3591711White flower2.552
SRR3591712Green floral bud3.133
SRR3591713Yellow flower1.975
SRP173429 SRR8316895Juvenile bud stage 6.811
SRR8316896Juvenile bud stage 26.922
SRR8316897Juvenile bud stage 4.214
SRR8316894Third green stage 6.027
SRR8316900Third green stage 2.974
SRR8316901Third green stage 7.151
SRR8316898Complete white stage 0.420
SRR8316899Complete white stage 1.952
SRR8316903Complete white stage 0.455
SRR8316902Silver flowering stage0.274
SRR8316904Silver flowering stage0.615
SRR8316905Silver flowering stage0.212
SRR8316906Gold flowering stage 0.510
SRR8316907Gold flowering stage 1.597
SRR8316908Gold flowering stage 0.422
SRP132670SRR6706286Control4.729
SRR6706287Light intensity 50%3.664
SRR6706288Light intensity 20%1.644
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.549
CNS0095593Slightly white alabastrum(diploid) 23.817
CNS0095594Slightly white alabastrum(diploid) 311.852
CNS0095595Whole white alabastrum(diploid) 21.018
CNS0095596Whole white alabastrum(diploid) 31.660
CNS0095597Whole white alabastrum(diploid) 41.856
CNS0095598Silvery flower (diploied) 12.691
CNS0095599Silvery flower (diploied) 21.342
CNS0095600Silvery flower (diploied) 30.746
CNS0095601Golden flower (diploid) 11.096
CNS0095602Golden flower (diploid) 22.098
CNS0095603Golden flower (diploid) 31.569
CNS0095604Slightly white alabastrum(tetraploid) 12.127
CNS0095605Slightly white alabastrum(tetraploid) 21.980
CNS0095606Slightly white alabastrum(tetraploid) 33.238
CNS0095607Whole white alabastrum(tetraploid) 10.793
CNS0095608Whole white alabastrum(tetraploid) 20.382
CNS0095609Whole white alabastrum(tetraploid) 32.460
CNS0095610Silvery flower (tetraploid) 10.370
CNS0095611Silvery flower (tetraploid) 21.510
CNS0095612Silvery flower (tetraploid) 30.545
CNS0095613Golden flower (tetraploid) 10.583
CNS0095614Golden flower (tetraploid) 21.172
CNS0095615Golden flower (tetraploid) 30.946
CRA001975CRR073297Stem 114.658
CRR073298Stem 223.620
CRR073299Stem 312.583
CRR073300Leaf 12.171
CRR073301Leaf 21.326
CRR073302Leaf 32.352
CRR073303Juvenile bud 10.250
CRR073304Juvenile bud 20.390
CRR073305Juvenile bud 30.641
CRR073306Third green 10.086
CRR073307Third green 20.731
CRR073308Third green 30.465
CRR073309Second white 10.446
CRR073310Second white 20.107
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.396
CRR073316Gold flowering 20.168
CRR073317Gold flowering 30.049
CRR073318Tawny withering 11.054
CRR073319Tawny withering 25.276
CRR073320Tawny withering 31.522